PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G01048

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ZF-HD

Protein Properties

Length: 344aa MW: 38154.6 Da PI: 8.6854

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G01048	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.2	2.9e-31	125	182	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eClkNhAas+Ggh++DGCgEfmp gee ++++lkCaAC+CHRnFHR+e e e Ro01_G01048 125 KAVRYRECLKNHAASTGGHVLDGCGEFMPC-GEEDSPEGLKCAACECHRNFHRKEIEGE 182 579************************9.8888******************9875 PP
2	Homeobox	15.4	3.1e-05	281	341	1	57
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt+f++eq + + e+ e + ++ +++e ++L +++g++ ++ kvW +N ++ +kk Ro01_G01048 281 KRFRTKFSQEQKDKMMEVAEklgwRIQKHDEQEVQQLCSEVGIKRQVFKVWMHNNKQAMKK 341 789**********99999676668999**************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MEVRGQDKVF GMPTTLGFNP PNRDSSSSSK LSSASVHHHH VNNTLIFNHP QTLDPFYHPP 60 PPPPPQPQHL NQPKPSRDPY PNPNPDPNPS PAAVYTTPQA TTSTPIASGS NHSFKPAPEP 120 VTASKAVRYR ECLKNHAAST GGHVLDGCGE FMPCGEEDSP EGLKCAACEC HRNFHRKEIE 180 GETQLVHVPN NYHVLNHHNN NNRSRRNASS APNIPSLPPP PPVHHHHQYH HFPATSPSMA 240 GSFPPGMMAF GGGGGAAESS SEDLNHINMF EQSNQAGGSR KRFRTKFSQE QKDKMMEVAE 300 KLGWRIQKHD EQEVQQLCSE VGIKRQVFKV WMHNNKQAMK KKQL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MEVRGQDKVF GMPTTLGFNP PNRDSSSSSK LSSASVHHHH VNNTLIFNHP QTLDPFYHPP  60
PPPPPQPQHL NQPKPSRDPY PNPNPDPNPS PAAVYTTPQA TTSTPIASGS NHSFKPAPEP  120
VTASKAVRYR ECLKNHAAST GGHVLDGCGE FMPCGEEDSP EGLKCAACEC HRNFHRKEIE  180
GETQLVHVPN NYHVLNHHNN NNRSRRNASS APNIPSLPPP PPVHHHHQYH HFPATSPSMA  240
GSFPPGMMAF GGGGGAAESS SEDLNHINMF EQSNQAGGSR KRFRTKFSQE QKDKMMEVAE  300
KLGWRIQKHD EQEVQQLCSE VGIKRQVFKV WMHNNKQAMK KKQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-27	ZF-HD family protein