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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G01040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 17991.7 Da PI: 10.2389 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.4e-08 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + + +W++Ia+ +g g+t++++k + Ro01_G01040 14 TWTAKQNKLFENALAIYDREthdRWRKIAKIVG-GKTEEEVKRQY 57 7*****************88*************.********877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MVPTKLSSPD SNSTWTAKQN KLFENALAIY DRETHDRWRK IAKIVGGKTE EEVKRQYEIL 60 EHDINCIESG KIPLPKYRKA GESNISNNDK SVPLKEWWPR RVIHLMDDAK NTAYSLLISF 120 VPKLGSKFTA AEEFKAIKKI SGIRHSTNFL RKWIY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-29 | MYB_related family protein |