PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G00839

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 381aa MW: 43279.4 Da PI: 7.5543

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G00839	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.1	7.2e-36	43	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Ro01_G00839 43 LPAGVKFDPTDQELI-EHLEAKVEAKDtkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdhlqa 135 799**********.99***996665443...133333666646******.555666799**************85666666654 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Ro01_G00839 136 GGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 187 33778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MNKSNIRSSD LIDAKLEEHQ MCGSKQCPGC GHKLEGKPDW LGLPAGVKFD PTDQELIEHL 60 EAKVEAKDTK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT 120 RKRRKIQTEC DHLQAGGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW 180 VMHQYHLGQH EEEKEGELVV SKIFYQTQPR QCNWSSDRTS AASASLTGEG SSDLRRDSGG 240 SGSCTSSKEI NIVSHNTHLR DHHDQMSAAA AQVNVVAQPL TSYNAIDIHQ LKSDHFSFVP 300 FRKSFDEHDY KCHGPLLIIT FSQKNLELTH QMKRDAYHVS RSIMLQNEHF QESSSMANPQ 360 EAEWMKYSSF WPDPDNPDHH G

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MNKSNIRSSD LIDAKLEEHQ MCGSKQCPGC GHKLEGKPDW LGLPAGVKFD PTDQELIEHL  60
EAKVEAKDTK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT  120
RKRRKIQTEC DHLQAGGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW  180
VMHQYHLGQH EEEKEGELVV SKIFYQTQPR QCNWSSDRTS AASASLTGEG SSDLRRDSGG  240
SGSCTSSKEI NIVSHNTHLR DHHDQMSAAA AQVNVVAQPL TSYNAIDIHQ LKSDHFSFVP  300
FRKSFDEHDY KCHGPLLIIT FSQKNLELTH QMKRDAYHVS RSIMLQNEHF QESSSMANPQ  360
EAEWMKYSSF WPDPDNPDHH G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-145	NAC family protein