PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000489.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 757aa    MW: 83209.4 Da    PI: 5.5007
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000489.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-2445146199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +
  Rmu_ssc0000489.1_g000004.1  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVA 125
                                 99*****************************8544444..48***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD+v+F   ++++ +l+++++r+
  Rmu_ssc0000489.1_g000004.1 126 GDSVLFI--WNEKNQLLLGIRRA 146
                                 *******..8899999****997 PP
2Auxin_resp118.94.2e-39171254183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+
  Rmu_ssc0000489.1_g000004.1 171 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWSNSHWRSV 253
                                 79*********************************9789******************************************98 PP

                  Auxin_resp  83 k 83 
                                 k
  Rmu_ssc0000489.1_g000004.1 254 K 254
                                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    
MHADVETDEV YAQMTLQPLS PQEQKDVYLM PAELGNPSKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDYSQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KRLVAGDSVL FIWNEKNQLL LGIRRANRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR  180
FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DSVRWSNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPSGMP  300
SFHALKDGDM GLNAPLMWLQ GGVGDPGMQS LNFQGFGVTP WMQPRLDASM AGLQPDVYQA  360
MAAAALQEMR AVDAKCSSQS LLPFQQSSNV SNGPTAMLQR HSLPQSQSQN TFLQSFQENQ  420
APASQLLQQQ LPIPSQTQQQ SFPESVGNAI SSSDVPPIHS ILGSLSQDGA SQLLNLSGSN  480
TGISSTLLPK VESQLSSGAA QCVLPQVDQL GTPQSNISEL TALPPFPGRE YSFQGATDPQ  540
SNLLFGVNID ASSLMLQNGI PNLRNIGSGT DSLSMPFGAS NYTSATGNDY PLNSDMTTSS  600
CVDESGFLPS SENVDQVNPP TRTFVKVHKS GSFGRSLDIS KFSSYDELRS ELGSMFGLEG  660
QLEDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKEGLNRVAS  720
VPSQKLSNGS NTCDDYVSRQ DMRNSSNGIA SLGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein