PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000487.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 382aa MW: 43930.8 Da PI: 6.0373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000487.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.6	6.3e-27	72	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf r+p++C++kw+nl k++kk k++ ++ s +++y+++ Rmu_ssc0000487.1_g000003.1 72 WVQDETRSLIALRREMDSMFNTSKSNKHLWEQISAKMREKGFDRNPNMCTDKWRNLLKEFKKAKHNHDRG--SGSAKMSYYKE 152 ******************************************************************98..44558***9 PP trihelix 85 le 86 +e Rmu_ssc0000487.1_g000003.1 153 IE 154 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MYLSEKPHPV DFHKGDEGGE DMMIEVVPNE DASQTHHRNH QQHHQLLLLG DSSGSGEDHE 60 ANKPQKKRAE TWVQDETRSL IALRREMDSM FNTSKSNKHL WEQISAKMRE KGFDRNPNMC 120 TDKWRNLLKE FKKAKHNHDR GSGSAKMSYY KEIEEILKER NKNGQYKSPT PPKVDSFMHF 180 SDKGMEDTNI SFAHVEANGR PTLNLETGLD HDGHPLAITA ADAVAANGVA PWNWRETPEN 240 GGENQSYGGR VIVVTWGDYT RRIGIDGSAD AIKEAIKSAF RLRTKRAFWL EDEDQIVRSL 300 DRDMPLGNYT LHLDEGLAVK VCLYDEPENI PVHTEEKIFY TEDDYHEFLT RRGWTCLREF 360 DGYRNIENMD DLRPGAIYRG VS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MYLSEKPHPV DFHKGDEGGE DMMIEVVPNE DASQTHHRNH QQHHQLLLLG DSSGSGEDHE  60
ANKPQKKRAE TWVQDETRSL IALRREMDSM FNTSKSNKHL WEQISAKMRE KGFDRNPNMC  120
TDKWRNLLKE FKKAKHNHDR GSGSAKMSYY KEIEEILKER NKNGQYKSPT PPKVDSFMHF  180
SDKGMEDTNI SFAHVEANGR PTLNLETGLD HDGHPLAITA ADAVAANGVA PWNWRETPEN  240
GGENQSYGGR VIVVTWGDYT RRIGIDGSAD AIKEAIKSAF RLRTKRAFWL EDEDQIVRSL  300
DRDMPLGNYT LHLDEGLAVK VCLYDEPENI PVHTEEKIFY TEDDYHEFLT RRGWTCLREF  360
DGYRNIENMD DLRPGAIYRG VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-171	Trihelix family protein