PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000472.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 335aa MW: 38226.2 Da PI: 8.6677

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000472.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90	5.2e-28	148	238	3	87
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec... 73 +k rhsk++T++g+Rd vRl a++a++f+d+qd+LG+d++sk+++W +++ak+ai+el+ + + Rmu_ssc0000472.1_g000004.1 148 DRKGRHSKVYTAKGPRDHCVRLAAHTAIQFYDVQDRLGYDRPSKAVDWVIKKAKAAIDELPPWnpnsisvqtT------Sypt 224 5899*********************************************************995544443220......1222 PP TCP 74 eaesssssasnsss 87 + sss+ ++n s Rmu_ssc0000472.1_g000004.1 225 VPISSSQDTQNASL 238 22333333332222 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MIDNEQVRLT GFYGNLETGE RHHSWEALRS LSQLFPHVGW IVFGDFNEIR NDGEKTGGRL 60 RLVCQMERFN KVIKDCFLQE IYFSGPSALL SRAILPLASS SSDDSAARLR KFVYSDLIGS 120 PISNFVEASN QAWEARSNSW IDLWWVTDRK GRHSKVYTAK GPRDHCVRLA AHTAIQFYDV 180 QDRLGYDRPS KAVDWVIKKA KAAIDELPPW NPNSISVQTT SYPTVPISSS QDTQNASLHF 240 SMVEALSSLS ANRRGAMVGS SGVAELVNQN SSSFLQVRMV WMWCCMSGTM ERMAGWDWSC 300 DLRVEGWQGL SSDQWCIKGG RRREREWWWL SRRRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-31	TCP family protein