PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000407.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 409aa MW: 46529.4 Da PI: 7.3311

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000407.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.6e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++ Rmu_ssc0000407.1_g000012.1 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNA 89 69**************************.99**********963433332556******************** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Rmu_ssc0000407.1_g000012.1 90 GFWKATGRDKCIRN-TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 *********9.8999**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPQGNLSSED GWVICRVFKK KNLFKVTGNN EGGSSSMNSS 180 DHHHHQQLTM NTNQLQARTF MHTHSSRSDT NQYLLRQQAF ELNRPHDHDQ DQDQLPPALH 240 YAHLNLQPPP QYSLFHSQAL NVPTNSHKTL AAYNDYSTLP SDSSPGHGMV KQLMTNPRDC 300 ESTGSESLRY QACEPGLEVN DTTCETNQQA IVNAGGRSSD VQGMSEWAML DRLVTSHLGN 360 EDSTSKGGAS AGARYDQDGN GSSTVNQINQ QQQQQLSLRG EMDFWGYAK

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPQGNLSSED GWVICRVFKK KNLFKVTGNN EGGSSSMNSS  180
DHHHHQQLTM NTNQLQARTF MHTHSSRSDT NQYLLRQQAF ELNRPHDHDQ DQDQLPPALH  240
YAHLNLQPPP QYSLFHSQAL NVPTNSHKTL AAYNDYSTLP SDSSPGHGMV KQLMTNPRDC  300
ESTGSESLRY QACEPGLEVN DTTCETNQQA IVNAGGRSSD VQGMSEWAML DRLVTSHLGN  360
EDSTSKGGAS AGARYDQDGN GSSTVNQINQ QQQQQLSLRG EMDFWGYAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-142	NAC family protein