PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000396.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 793aa MW: 89731.4 Da PI: 6.1335

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000396.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.2	5.1e-10	724	772	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +WT+eE+e l ++ k++ ++ Wk+I gRt ++k++w++++ Rmu_ssc0000396.1_g000008.1 724 KWTKEEEEALRHGYKKYKTN-WKLILGDPAykacHGRTNVDLKDKWRNLM 772 8***************99.*************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence
MFLMPNPIDD IIILPPHDHP CLSLWHRLLN LNFIIQNINK IFFTSNIVPE IPSSISSLSF 60 CNIQKSTPLC LVFLILSLSI VARNIFQDSE MVKAQGASDH LVKIFPENMQ DIPQDENSKD 120 QFLIQSKSGG TQVLWNNVQK LKSEPVYKNS FVTESLWSPL GTYLANVKKQ DIILFRGTSA 180 LHHVATCLHP KVFEVKWVDF SPGENYLVSY SVEQKNTGEI TRAAISIFDV KTGKVVKKIV 240 GGPHDFANKG VGASWPIFKW SGGRDDKYFA LISQNVISIY EINTFTAILT VGNVMDFSWS 300 PTDAILALFV SESVDAGGAI PALVKLVQIP SKEQLIEKKL SSVSKCKMYW QSNGEYLAMK 360 VDSSTNNFVE LFQIKDRGID NKILALPYNK DKVTAFAWEP MGHRFAIIQS NEDISFYSMR 420 DATSTGCVSL LTILRSKGTN YLFWSPSGGL IILARLNGSN GNLEFFNVDE LRTVAISKHI 480 ATALEWNPTG RYVATSTPGT CHEKPSFNIW SFDGHLLYQL QKDLFTKFSW RPRPLNMATK 540 AIMGSMSHNS LHSLNMEDDE YSLNMEDDEY SLNMEDDEYS LNMEDDEYSL NMEDDDNSMS 600 LTGGIKKSVA FMEKFHEDLD AFYRLDDEER QLLIDLKYLT LSPASQKPKE KDVVIVISDD 660 EEEEKHVLMN LKYLASSSTS KKPEGADVVI GISDEEEKMA LQPSSPKKTL PMAGQTKERR 720 FHRKWTKEEE EALRHGYKKY KTNWKLILGD PAYKACHGRT NVDLKDKWRN LMRADDRAKA 780 KACYSLPNGI DGT

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence

MFLMPNPIDD IIILPPHDHP CLSLWHRLLN LNFIIQNINK IFFTSNIVPE IPSSISSLSF  60
CNIQKSTPLC LVFLILSLSI VARNIFQDSE MVKAQGASDH LVKIFPENMQ DIPQDENSKD  120
QFLIQSKSGG TQVLWNNVQK LKSEPVYKNS FVTESLWSPL GTYLANVKKQ DIILFRGTSA  180
LHHVATCLHP KVFEVKWVDF SPGENYLVSY SVEQKNTGEI TRAAISIFDV KTGKVVKKIV  240
GGPHDFANKG VGASWPIFKW SGGRDDKYFA LISQNVISIY EINTFTAILT VGNVMDFSWS  300
PTDAILALFV SESVDAGGAI PALVKLVQIP SKEQLIEKKL SSVSKCKMYW QSNGEYLAMK  360
VDSSTNNFVE LFQIKDRGID NKILALPYNK DKVTAFAWEP MGHRFAIIQS NEDISFYSMR  420
DATSTGCVSL LTILRSKGTN YLFWSPSGGL IILARLNGSN GNLEFFNVDE LRTVAISKHI  480
ATALEWNPTG RYVATSTPGT CHEKPSFNIW SFDGHLLYQL QKDLFTKFSW RPRPLNMATK  540
AIMGSMSHNS LHSLNMEDDE YSLNMEDDEY SLNMEDDEYS LNMEDDEYSL NMEDDDNSMS  600
LTGGIKKSVA FMEKFHEDLD AFYRLDDEER QLLIDLKYLT LSPASQKPKE KDVVIVISDD  660
EEEEKHVLMN LKYLASSSTS KKPEGADVVI GISDEEEKMA LQPSSPKKTL PMAGQTKERR  720
FHRKWTKEEE EALRHGYKKY KTNWKLILGD PAYKACHGRT NVDLKDKWRN LMRADDRAKA  780
KACYSLPNGI DGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	8e-10	MYB_related family protein