PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000372.1_g000047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 26477.9 Da PI: 10.3136 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.6 | 4.8e-30 | 48 | 147 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceae 76 + +kdrhsk++T++++Rd R+Rl a++a++f+d+qd+LG+d++sk ++W +++ak+ai+el+ + +s+ + + Rmu_ssc0000372.1_g000047.1 48 TDRKDRHSKVYTSKSPRDHRIRLTAHTAIQFYDVQDRLGYDRPSKVVDWDIKKAKAAIDELPPWnlnsisvqT-TSS-PTVPI 128 679************************************************************9888776531.222.22333 PP TCP 77 sssssasnsssgkaaksaa 95 s ++++n s + ++ +a+ Rmu_ssc0000372.1_g000047.1 129 SAAQNTQNASLHFSMVEAP 147 3334444333332222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MGESHNNLHH RAMTSSSAAS LLGLGIRTAS SSTASKIVEV RGHILRATDR KDRHSKVYTS 60 KSPRDHRIRL TAHTAIQFYD VQDRLGYDRP SKVVDWDIKK AKAAIDELPP WNLNSISVQT 120 TSSPTVPISA AQNTQNASLH FSMVEAPSSL SANRQGAMMG SSGVAELVNQ NSSNFLQVRM 180 VWRWCCLSGT TERMAGWDWS CDLRVEGWQG LSFLSMVYKR GSEERTRVVV AKLSAAAGMN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 8e-37 | TCP family protein |