PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000368.1_g000035.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 686aa    MW: 76063 Da    PI: 7.0095
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000368.1_g000035.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23129229198
                                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 f+k+lt sd++++g +++ +k+a+++     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD
  Rmu_ssc0000368.1_g000035.1 129 FCKILTASDTSTHGGFSVLRKHANDClppldMNQPTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 211
                                 99*********************999****977777778******************************************** PP

                                 EEEEEE-SSSEE..EEEEE- CS
                          B3  79 fvvFkldgrsefelvvkvfr 98 
                                  +vF +    ++el+v+v+r
  Rmu_ssc0000368.1_g000035.1 212 AFVFLR--GGNGELRVGVRR 229
                                 *****4..378899****98 PP
2Auxin_resp104.99.7e-35255334183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                 a+ha+ t++ F v+Y+Pr+  s+F+v ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv dl+p +W++SkWrsLk
  Rmu_ssc0000368.1_g000035.1 255 ASHAVMTSTLFVVYYKPRT--SQFIVGLNKYLEAINNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDLSP-HWSESKWRSLK 334
                                 6899**************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MAHSECDSSS ISRATADTGF GGALYTELWK LCAGPLVDVP SPGERVFYFP QGHMEQLEAS  60
TNQELNPQIP RFNIPSKILC RVVNIQLLAE RETDEVYAQI TLHPESDQSE PTSPDPCVPE  120
PPKPATYSFC KILTASDTST HGGFSVLRKH ANDCLPPLDM NQPTPTQELV AKDLHGYEWK  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGGN GELRVGVRRL ARQQTPMPSS  240
VISSQSMHLG VLATASHAVM TSTLFVVYYK PRTSQFIVGL NKYLEAINNK FSVGMRFKMR  300
FEGEDSPERR FTGTIVGVGD LSPHWSESKW RSLKVQWDEH ATVPRPDRVS PWEIEPFVAS  360
VPLNLAQPVV KSKRPKTVEI ASSEITTNST ASPFWYQGSN QSVELTQLGS VAEVQSSGSQ  420
AVWPPRQKES NGSSYSSSRI CAEGIWPSSP KVNVSLSLFA DSQEGNKNVS MGSTPPSFPS  480
PASKPSNGPV HDQLETGKKS ESSSGFRLFG YDVPNSITAR FREREPMFMT VCCGAKGPIL  540
AAASELDQDL DISKISKEQM QVVSEMPPIE TQSKQGSTVS TRSRTKVHMQ GVAVGRAVDL  600
TALKGYDDLI NELEKMFEIK GELRPANKWA VVFTDDENDM MLLGDDQWQD FCRTVKKIFI  660
YSSDYVQMLR QGKQKNSALV CQETEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein