PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000367.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 369aa MW: 42653.6 Da PI: 4.4359

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000367.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.4	4.2e-14	123	207	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt++ v +L+e+ ++ +l+r++l+ +W++v+ k++e+ ++ers kqC++ ++ l+++ykk+k+ ++ + ss++ yf Rmu_ssc0000367.1_g000009.1 123 EWTEHAVFVLLEVWGDRFLELGRKSLRSEDWSDVAVKVSEGsKLERSDKQCRKMLDMLKRKYKKEKAKVEE--TGGSSKWGYF 203 5***********************************665278*******************9998..47788* PP trihelix 83 dqle 86 +++e Rmu_ssc0000367.1_g000009.1 204 KKME 207 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDDMEDDERY HPKPYNHHSS SNRRKIHTRN NPYSRAPPNR YEPEGDDDAI DDDLDEENYG 60 QDDVVVEEQY QHHPHDLNRS FDAPAENGFE WHPKKRKLKN LDSGYEFAPR VKFPGRVGSS 120 SEEWTEHAVF VLLEVWGDRF LELGRKSLRS EDWSDVAVKV SEGSKLERSD KQCRKMLDML 180 KRKYKKEKAK VEETGGSSKW GYFKKMEMLM ASNMRQECGL ACGVDNGEYV FMNTRVYLEK 240 SNGFDEMRDS PGESETDEEE NESEQNGFGF GIPPRQGGGG GLEGSSFRVL ADSIQKFGEI 300 YENIESSKRQ QMMELEKMRR DFNKEMELQK KQILERAQAE IAKIQEADDE DDDDGDDDDS 360 DASAEDLSE

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDDMEDDERY HPKPYNHHSS SNRRKIHTRN NPYSRAPPNR YEPEGDDDAI DDDLDEENYG  60
QDDVVVEEQY QHHPHDLNRS FDAPAENGFE WHPKKRKLKN LDSGYEFAPR VKFPGRVGSS  120
SEEWTEHAVF VLLEVWGDRF LELGRKSLRS EDWSDVAVKV SEGSKLERSD KQCRKMLDML  180
KRKYKKEKAK VEETGGSSKW GYFKKMEMLM ASNMRQECGL ACGVDNGEYV FMNTRVYLEK  240
SNGFDEMRDS PGESETDEEE NESEQNGFGF GIPPRQGGGG GLEGSSFRVL ADSIQKFGEI  300
YENIESSKRQ QMMELEKMRR DFNKEMELQK KQILERAQAE IAKIQEADDE DDDDGDDDDS  360
DASAEDLSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-73	Trihelix family protein