PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000364.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 300aa    MW: 32374.3 Da    PI: 8.3264
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000364.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-3141081100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg
  Rmu_ssc0000364.1_g000001.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVG 86 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelallkee 100
                                 +++++++ql+q+++e +l +++
  Rmu_ssc0000364.1_g000001.1  87 LLWSGSWQLCQAAVENVLKGQP 108
                                 **************99988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGQPIT PITSEAAASG  120
HGPPLKAYDI RHVSKDENSA ASNDPQKAKT RYRFKRSVAK PKQPNKTGSG SGVEDAAARF  180
EAKPNWTSDE FNRSTSHESS LSHQSEAANV DGDSKETESM VSSETAEASL LFRAEPESSA  240
HKRTAPVQEN ELGLELTLGF ESSSRAPHVV PVKKRRVDAS EFCGGSSSGD GACKMELGLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-101LBD family protein