PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000355.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 272aa    MW: 30407.2 Da    PI: 8.2971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000355.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM782.1e-24111421127
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkr 73 
                                 lppG+rF P++e+l+++yL +k  + +    +   + ike+d+y+++P dLp        + +++++wy ++ r  k      
  Rmu_ssc0000355.1_g000009.1  11 LPPGCRFYPSEEQLLCYYLSHKNGAGQassgNGGYDLIKELDLYDHDPFDLPdYacysyGHGGRRRHWYCYTVRVVK------ 87 
                                 79********************998884444334458***************5356543222355588888877654...... PP

                         NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyr 127
                                 ++r +k gyW+ +g+ ++v+ + ++++ g + +  fy g++pk +++tdWv+ +y+
  Rmu_ssc0000355.1_g000009.1  88 ERR-AKGGYWRRKGRVRDVVGRgGNAVLGRRSSYEFYLGSSPKtAVRTDWVLYQYA 142
                                 345.688**************9566679*********997766167*********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGDAKATSYY LPPGCRFYPS EEQLLCYYLS HKNGAGQASS GNGGYDLIKE LDLYDHDPFD  60
LPDYACYSYG HGGRRRHWYC YTVRVVKERR AKGGYWRRKG RVRDVVGRGG NAVLGRRSSY  120
EFYLGSSPKT AVRTDWVLYQ YAQVDHVQAS FVLCRVFVRS QGGTSKSENG LSSCAEETVS  180
TVRLIGIQHG GFCTPHIVPE IHSDKSVPRN TDKSKDQMTL ETEVDKQVKT GPLSSIQTNE  240
QVQSYVLGVE AGSPPVKICL CLKGMFSLEL EE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-19NAC family protein