PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000350.1_g000034.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SRS
Protein Properties Length: 795aa    MW: 85473.1 Da    PI: 7.8985
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000350.1_g000034.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702203.85e-635577254153
                      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelks 80 
                                  + +CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + +  ++  ++++      +++++k++r  +s
  Rmu_ssc0000350.1_g000034.1 557 SALTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSEGVAAAGSSAStshtnnTSSNAKKPRLVTS 639
                                 5679*********************************************8776543332222222344557888888888888 PP

                      DUF702  81 kkqsalsstklssaeskkeletss............lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydq 150
                                 ++++ +++ ++s+++++++ + +s            +P +v+++avf+cvrv++vdd +e e+aY+++v+i+GhvfkG+Lydq
  Rmu_ssc0000350.1_g000034.1 640 QNTTPSHTNSTSNTTPPRSYDSTSklqhqdggfpetMPGQVRAPAVFKCVRVTAVDDgAEGEYAYHAVVKINGHVFKGFLYDQ 722
                                 888888888999999999999888999******************************77899********************* PP

                      DUF702 151 Gle 153
                                 G+e
  Rmu_ssc0000350.1_g000034.1 723 GVE 725
                                 *98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    
MFRPCIALLG LEECHLRAWP LCTFLHPAWS TPSASPLGLP KSVPTVVVVS LWQKFFRPSW  60
LSGVEACVLS DHSPAVQART APLEAPCCGG SSRPRRARLK CHDIMMAAAL ADLGGSWWAQ  120
LVTGRIPMSG QQESRHGELL VVRRLDARLS IWVLWQDQGA TVKERCRREE AGGTAARNEG  180
DGSGRRAGAK MPKCLGAQIR LRWAWACVKF DSSDLITLDS SWIWIGIWDP GRIQIRILDP  240
RQLLMLIWYL FWFLGVRLLI FEFLTPSVTF ELPVSESPLL GDHIIYYVRI RHIYREANGV  300
ADRLAHLASL FAIDDVWLDE TPATIQDVLY EDYWLSVVAT TRRLPSDSGA FADWVGGSSA  360
SSSANDLCLG FNAGPTAGPS PSASAAMWSS SSGPSRPINY GFPPEMGMLG LRDVFLVAPA  420
AAYHNHPHHH HHPPHHQQDL LSSDHNSMNG SNPATALGVG VIPLLTTTPC LGPPNTNMND  480
DNDDDDDHNM LSGRNRNSAG GGGGGGSIHL WQQPTQQQHQ LFLKRNQNLH GGAHLMVQGG  540
GGNFGASAAS ASASASSALT CQDCGNQAKK DCSHRRCRTC CKSRGFDCAT HVKSTWVPAA  600
RRRERQLMSE GVAAAGSSAS TSHTNNTSSN AKKPRLVTSQ NTTPSHTNST SNTTPPRSYD  660
STSKLQHQDG GFPETMPGQV RAPAVFKCVR VTAVDDGAEG EYAYHAVVKI NGHVFKGFLY  720
DQGVEGQGRD HHGFPNISDL HLGGRSGGAT STPPTGRNGG APILDPADAY AAAAAAASTS  780
GGLLLGVSNF GNSIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.11e-58SRS family protein