PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000341.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22489.6 Da    PI: 10.2535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000341.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.6e-221664149
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                k+ien   rqvtfskR+ g++KKA+E+S+L++a v+++ifs+ gk y +
  Rmu_ssc0000341.1_g000014.1 16 KKIENVNERQVTFSKRKSGVIKKASEMSTLTGAHVCLVIFSEAGKPYSF 64
                                68*******************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MEGGKKTKGR QKIPIKKIEN VNERQVTFSK RKSGVIKKAS EMSTLTGAHV CLVIFSEAGK  60
PYSFGSPSIE SVAGRFLPEL QNQNQISDDA RAVLEANRQA RVDGILRIHN DLESKLKEDR  120
DRAKELRKRE RERTSKDQGG LCWWEKPMEG LELAELKQMH SSFERLQNYL ASYLKSTASA  180
GGSSSGGATG IPPGTLPARF GLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-29M-type_MADS family protein