PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000339.1_g000018.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 129aa    MW: 14276.3 Da    PI: 10.2657
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000339.1_g000018.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.58.1e-0924664586
                    trihelix 45 rspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                                ++  qC +k+e+l+kry+++k+++++     sss++++f+ ++
  Rmu_ssc0000339.1_g000018.1 24 KTVLQCCHKMEKLSKRYRAEKQRASRYpGRSSSSSWALFHLMD 66
                                6778*********************9855788899*****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MLSFIFWDHV AVATASAAPS SPPKTVLQCC HKMEKLSKRY RAEKQRASRY PGRSSSSSWA  60
LFHLMDEMES NPDRGLDNGG EFGRGFSLKA LNLMKFDGNG GWNGRIGGGM MREAQVKLGS  120
RANHNILEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-09Trihelix family protein