PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000289.1_g000033.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 326aa    MW: 35998.2 Da    PI: 9.8129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000289.1_g000033.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.41.2e-42351993134
                         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                                  kkdrhski+T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skt+eWLl+qa+++ik+  +                     
  Rmu_ssc0000289.1_g000033.1  35 CKKDRHSKISTARGLRDRRMRLSLDVARKFFGLQDMLGFDKASKTVEWLLNQAEAEIKKVKREmngqnenqssstttaagaga 117
                                 69*************************************************************88887765555444444444 PP

                         TCP  66 ...ssssaseceaesssssasnsssg.......................kaaksaa.kskksqksaasalnlakesrakarar 121
                                    ++ss sec              +                       ++ak+    + +++k++a ++ lak sr+ arar
  Rmu_ssc0000289.1_g000033.1 118 rarTTSSISEC--------------EvvsgtdevatddiidkvsrtsssSSAKNRIkRTVRQPKKSALFNPLAKASREMARAR 186
                                 44322222444..............0444444444445556666666655666666577788888899999999********* PP

                         TCP 122 arertrekmrikn 134
                                 arertrekm  ++
  Rmu_ssc0000289.1_g000033.1 187 ARERTREKMGRQS 199
                                 *********8775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MVEGDSNKDD QVVIGKEGEQ QQQQQKQIPM TRRSCKKDRH SKISTARGLR DRRMRLSLDV  60
ARKFFGLQDM LGFDKASKTV EWLLNQAEAE IKKVKREMNG QNENQSSSTT TAAGAGARAR  120
TTSSISECEV VSGTDEVATD DIIDKVSRTS SSSSAKNRIK RTVRQPKKSA LFNPLAKASR  180
EMARARARER TREKMGRQSK PCGDVDQAKK MKPDLSQLSS WSTFETGEES GATQSHNNNI  240
NNHSPLEALA EVEEPISSFQ AAATTVVVHR HIHQDLIEID GHDAVANLVT MGKWSPSSTF  300
NSLQNTSGSI SQEVCSTTTR IIFCAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-25TCP family protein