PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000286.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 313aa MW: 35684.5 Da PI: 6.8505

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000286.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	24	42	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk+F + L++H H Rmu_ssc0000286.1_g000009.1 24 GCGKTFIDAGALRKHSHIH 42 7**************7766 PP
2	zf-C2H2	16.8	1.9e-05	47	71	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H Rmu_ssc0000286.1_g000009.1 47 YVCHyeGCGKKFLDSSKLKRHFLIH 71 9********************8877 PP
3	zf-C2H2	22	4.2e-07	77	101	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH Rmu_ssc0000286.1_g000009.1 77 FVCPheGCGKAFSLDFNLRSHMKTH 101 89**********************9 PP
4	zf-C2H2	16.1	3.2e-05	107	131	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H Rmu_ssc0000286.1_g000009.1 107 HICPypECGKRYAHEYKLKNHISSH 131 679999******************6 PP
5	zf-C2H2	14.1	0.00013	173	198	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H Rmu_ssc0000286.1_g000009.1 173 YACPyeGCEKAYIHEYKLKLHLRReH 198 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MGSAGCRSNR WKVLSLEMGH SYEGCGKTFI DAGALRKHSH IHGERQYVCH YEGCGKKFLD 60 SSKLKRHFLI HTGERDFVCP HEGCGKAFSL DFNLRSHMKT HSQENYHICP YPECGKRYAH 120 EYKLKNHISS HHEKLQSVPV DVPKYTVPPS EKQTKTPKPS AGVYGSASSD RPYACPYEGC 180 EKAYIHEYKL KLHLRREHPG HMSDENAEHA LNTADNEMDE ASDQDVYAGK RVNGKSQKTN 240 RAKPNLKFPP AKVRKGSTPS QATTNPMKKP WPVKEVVYEE DSEETEEDRD NVEDGWRYAG 300 NNDDDDEETE DED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-120	C2H2 family protein