PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000255.1_g000061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 158aa MW: 18167.4 Da PI: 10.5557 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 55.2 | 2.8e-17 | 15 | 69 | 1 | 63 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikelt 63 a+g+kdrhsk++T +g Rl+a++a++f+d+qd+LG+d++sk+++W + +i+ l Rmu_ssc0000255.1_g000061.1 15 ATGRKDRHSKVCTTKGY-----RLVAHTAIQFYDMQDRLGYDRPSKAVDW---RGENQIIRLR 69 589*************7.....6***************************...5666666655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MGESHNNLHH RTTTATGRKD RHSKVCTTKG YRLVAHTAIQ FYDMQDRLGY DRPSKAVDWR 60 GENQIIRLRL QSASWRLKRG ESSGASGEIP QQIKQLTSLS YVNVSPNNLT GSIPQGCQFN 120 TFKRTSFEGT RDCVENHCQR NVEMLRLQLH ATLKHRWS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 2e-22 | TCP family protein |