PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000204.1_g000036.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 488aa MW: 55733.1 Da PI: 4.4932

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000204.1_g000036.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.8	2.6e-31	25	115	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k ye+++de+++++iswse+++sfv+ d ++f+ +Lpk Fkhsnf+SF+RQLn+YgF+k++ ++ F+++ Rmu_ssc0000204.1_g000036.1 25 FLRKCYEMVDDEQTDSIISWSESNDSFVIRDVTQFSVLMLPKNFKHSNFSSFMRQLNIYGFRKIDPDH---------YVFANE 98 9***************************************************************99.........67 PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkk 101 F +g+k+ll++i r+k Rmu_ssc0000204.1_g000036.1 99 GFIRGQKHLLKNIFRRK 115 ***********9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MVRKSKEKEK TGDGSGSAEG SVAPFLRKCY EMVDDEQTDS IISWSESNDS FVIRDVTQFS 60 VLMLPKNFKH SNFSSFMRQL NIYGFRKIDP DHYVFANEGF IRGQKHLLKN IFRRKYPQGT 120 DQSKTLQQKD NQRDDPDEPS EDIESGLWRE VENLKIDKIS LKQELVKLRQ HQEISENNLL 180 LLRDRLHGME KDQQQMLSFL VMAMQNPGFL VQLVQSKEHS WRFAEAGNML EEVDDGRPMA 240 ADGAIVRYQP PLDEAPEPVF TPHSGSEIQP EIDSFVNSDG VIVRYQPVDE APDPVFTRNF 300 VSEKQPEFDS YPDGVGDSFM YSDGAIVRYR SPMDAAPKPI LTQSSGSGKQ PEFDSYPDGM 360 KDFFVNSDLV KMLMDDKLSP RENHAPFILP DTDVDDNAWE KLLLTSYLLE NTEGAKEERK 420 EPEDSRMEVE STAAELDESK NFDSLIEQMN KSVHGSNMEN SRNLEFNGEH LGLMASEPNK 480 KQETQLGK

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MVRKSKEKEK TGDGSGSAEG SVAPFLRKCY EMVDDEQTDS IISWSESNDS FVIRDVTQFS  60
VLMLPKNFKH SNFSSFMRQL NIYGFRKIDP DHYVFANEGF IRGQKHLLKN IFRRKYPQGT  120
DQSKTLQQKD NQRDDPDEPS EDIESGLWRE VENLKIDKIS LKQELVKLRQ HQEISENNLL  180
LLRDRLHGME KDQQQMLSFL VMAMQNPGFL VQLVQSKEHS WRFAEAGNML EEVDDGRPMA  240
ADGAIVRYQP PLDEAPEPVF TPHSGSEIQP EIDSFVNSDG VIVRYQPVDE APDPVFTRNF  300
VSEKQPEFDS YPDGVGDSFM YSDGAIVRYR SPMDAAPKPI LTQSSGSGKQ PEFDSYPDGM  360
KDFFVNSDLV KMLMDDKLSP RENHAPFILP DTDVDDNAWE KLLLTSYLLE NTEGAKEERK  420
EPEDSRMEVE STAAELDESK NFDSLIEQMN KSVHGSNMEN SRNLEFNGEH LGLMASEPNK  480
KQETQLGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-82	HSF family protein