PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000192.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 2035aa MW: 224216 Da PI: 8.9199

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000192.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	1909	1930	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tGtC+ G++Ck +H++ Rmu_ssc0000192.1_g000011.1 1909 CQTFEETGTCPQGPKCKLHHPK 1930 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2035 aa Download sequence
MDLPQYLHHH PRYAPSSSSD PNFPNYPHRA TNHYHHRHTP PPPPPTQPPQ LRSQSPSSFK 60 SLPPPPPPPH PQRTTFSPHP IDSDHSRTFS PRTTHRPPPL DSDRPRHRLY LESGPDYRDR 120 SRNYSPRDYD RELHKPYRRD PDGGGARFRS EYEEQRDRRV DDGYRRRSCN HETTTFREVE 180 FQDSGSGCYD ESAYEELLKS GRRYEAYEIQ RWGLERAQSE EDLYDPFELD EHDEEDRIVS 240 EKRDYYGSES GRSSSTSRWK QIQKKSALLR LQTPKTRDRN YSAYYDSSGS GGSFRGKEQY 300 EYEYSGHGRK DAVEEERRGG GGEEERGQQQ RGGSSPLDLD VSFKSNSLVA KPVRTRDEKR 360 GSLSDMDCSE SPPAKPCEDV VNLDSLALVS NKASSPGKEA MKLKGQVTTS GMNSQPCSVV 420 TDDAFVKSEV ETAPKGKILH KDGKDVGSSH KSSPNVSKKT KVVKKIVAKK TVKKVTNPPT 480 SQPQSKIDEP GTSTVHSLFA GTGKGETSSI SDPCPNDLHV LSVDKEVEGS LPNVLSDEYG 540 TVLNSCSKNV GNNSSANLGS LSPAEINTDQ KHPLNVDTPV KGLLTISNFN SNATDSIKVA 600 TRPETGGVVD VSKSICQSGN ILLVDKVVQK ESSQAMLAVE GNLSPGFLNS DKMHELTNVK 660 GSEHGAAETL EKLSHQEIIV PDVGTVDAVS EQPCRYQLPT SLQNGGVVEE LPKAISSAEN 720 NMAVGLSSSG ETKAVRSKIG RRTRWDSDEV YVKKDKSITV SNGGNTNSFG KQSSPDCDSR 780 SFEICATERS PNIPKSVGDT HSVTPMIQKK RKVKTQLDFS RISDTCVDPV NVSPRKDAPD 840 TTVSSFLKDP SHAEVSVSGV QKLDMGSQPG NDWVSVLNGK SSVNGFSDTK LSARIDANYD 900 TNETSPEYSK RRKVSGTHLV LTSAQTNGGP ANKSTSYIQE SSTHNDVPTY QADKGASSSI 960 GSQCATSNLI PSPEEINVYL EDIMAAVSSD TVAAARDSFT NDDMEIRHQG IDSSSVSEGS 1020 GIPHMQIPCP LQSQNEDKED GTEVMVVNNH HLDILDIDGS HEKDFDVCAT NEHIMVQGET 1080 APCTIHSELQ PADLGINSFS TNIESDYLCV KDKLPFVPSC LLSIANGNEV TSTNSIDEGM 1140 KSVSDTLSDT GTPETSTSIT DVHMLISNPS VIKSFDEKVC ADDQKFEVKS EVASAGNLFS 1200 ETKTNLTLDN VTEGHQSVSE KAVPLKLQDS KKTSHGLHLI SAESALKNQL GQATHRIVPG 1260 RPFSAFTTSQ KATSSTHISK PRTWHRNANS SVSPLPVSTL PPQRQLPQRN GKLESNSYVR 1320 KGNTLVRRRA TIAAVPQSSQ GLSSSVHQLN FSGIDGLKKN AGSDSRVDIK NPPRTGGLNA 1380 SSDRPPAPLP SGVKMSASAA VSSGIPTSSP LAEPLLSDIS GTKSDPMNCS ETKDAEGSVK 1440 DSLATSDTQE YHSGPVNNLH DGNVASSNMK KVIYVKRKLN QLVASSSNPS DLSVHNADKN 1500 QPSDGYYKRR KHQLIRSSLE SNGKDTVLLP TDNLNSGEQK ARKVIPSRTF NKKRSLKAVA 1560 RMSKKNSLVW TPSGSQSSNN NGSSYDHQKV LPQLFPWKRA RYWRTVMQSQ ASNFNYSSSS 1620 TISKKLLLSR MRDTVYTRST HGFSLRKYKV LSVGGSSLKW SKSIESRSKK VNEEATRAVA 1680 EVEKKKREHN GAACTSSGSK IRNSPGKRIF RIGSVRYKMD PSRRTLKRIS DDESSKSVVL 1740 NPETDAKRSY VPRRLVIGND EYVRIGNGNQ LIRDPKKRTR ILASERVRWS LHTARQRLAK 1800 KRKYCQFFTR FGKCNKDDGK CPYIHDSSKI AVCTKYLNGL CSNPNCRLTH KVIPERMPDC 1860 SFFLQGLCTN KNCSYRHVNV NPKASTCEGF LKGYCADGNE CRKKHSYVCQ TFEETGTCPQ 1920 GPKCKLHHPK KRMKGKIKKR SREHRNVWGR YFVSKDVGVS EPITASAKHR AQNGDDIIGN 1980 DFVSINVSDE EAGESNNPPE QTTFYDSDPS ELDLDDLDEL IKPVRLLNKM KTNIY

Sequence ? help Back to Top

Protein Sequence Length: 2035 aa Download sequence

MDLPQYLHHH PRYAPSSSSD PNFPNYPHRA TNHYHHRHTP PPPPPTQPPQ LRSQSPSSFK  60
SLPPPPPPPH PQRTTFSPHP IDSDHSRTFS PRTTHRPPPL DSDRPRHRLY LESGPDYRDR  120
SRNYSPRDYD RELHKPYRRD PDGGGARFRS EYEEQRDRRV DDGYRRRSCN HETTTFREVE  180
FQDSGSGCYD ESAYEELLKS GRRYEAYEIQ RWGLERAQSE EDLYDPFELD EHDEEDRIVS  240
EKRDYYGSES GRSSSTSRWK QIQKKSALLR LQTPKTRDRN YSAYYDSSGS GGSFRGKEQY  300
EYEYSGHGRK DAVEEERRGG GGEEERGQQQ RGGSSPLDLD VSFKSNSLVA KPVRTRDEKR  360
GSLSDMDCSE SPPAKPCEDV VNLDSLALVS NKASSPGKEA MKLKGQVTTS GMNSQPCSVV  420
TDDAFVKSEV ETAPKGKILH KDGKDVGSSH KSSPNVSKKT KVVKKIVAKK TVKKVTNPPT  480
SQPQSKIDEP GTSTVHSLFA GTGKGETSSI SDPCPNDLHV LSVDKEVEGS LPNVLSDEYG  540
TVLNSCSKNV GNNSSANLGS LSPAEINTDQ KHPLNVDTPV KGLLTISNFN SNATDSIKVA  600
TRPETGGVVD VSKSICQSGN ILLVDKVVQK ESSQAMLAVE GNLSPGFLNS DKMHELTNVK  660
GSEHGAAETL EKLSHQEIIV PDVGTVDAVS EQPCRYQLPT SLQNGGVVEE LPKAISSAEN  720
NMAVGLSSSG ETKAVRSKIG RRTRWDSDEV YVKKDKSITV SNGGNTNSFG KQSSPDCDSR  780
SFEICATERS PNIPKSVGDT HSVTPMIQKK RKVKTQLDFS RISDTCVDPV NVSPRKDAPD  840
TTVSSFLKDP SHAEVSVSGV QKLDMGSQPG NDWVSVLNGK SSVNGFSDTK LSARIDANYD  900
TNETSPEYSK RRKVSGTHLV LTSAQTNGGP ANKSTSYIQE SSTHNDVPTY QADKGASSSI  960
GSQCATSNLI PSPEEINVYL EDIMAAVSSD TVAAARDSFT NDDMEIRHQG IDSSSVSEGS  1020
GIPHMQIPCP LQSQNEDKED GTEVMVVNNH HLDILDIDGS HEKDFDVCAT NEHIMVQGET  1080
APCTIHSELQ PADLGINSFS TNIESDYLCV KDKLPFVPSC LLSIANGNEV TSTNSIDEGM  1140
KSVSDTLSDT GTPETSTSIT DVHMLISNPS VIKSFDEKVC ADDQKFEVKS EVASAGNLFS  1200
ETKTNLTLDN VTEGHQSVSE KAVPLKLQDS KKTSHGLHLI SAESALKNQL GQATHRIVPG  1260
RPFSAFTTSQ KATSSTHISK PRTWHRNANS SVSPLPVSTL PPQRQLPQRN GKLESNSYVR  1320
KGNTLVRRRA TIAAVPQSSQ GLSSSVHQLN FSGIDGLKKN AGSDSRVDIK NPPRTGGLNA  1380
SSDRPPAPLP SGVKMSASAA VSSGIPTSSP LAEPLLSDIS GTKSDPMNCS ETKDAEGSVK  1440
DSLATSDTQE YHSGPVNNLH DGNVASSNMK KVIYVKRKLN QLVASSSNPS DLSVHNADKN  1500
QPSDGYYKRR KHQLIRSSLE SNGKDTVLLP TDNLNSGEQK ARKVIPSRTF NKKRSLKAVA  1560
RMSKKNSLVW TPSGSQSSNN NGSSYDHQKV LPQLFPWKRA RYWRTVMQSQ ASNFNYSSSS  1620
TISKKLLLSR MRDTVYTRST HGFSLRKYKV LSVGGSSLKW SKSIESRSKK VNEEATRAVA  1680
EVEKKKREHN GAACTSSGSK IRNSPGKRIF RIGSVRYKMD PSRRTLKRIS DDESSKSVVL  1740
NPETDAKRSY VPRRLVIGND EYVRIGNGNQ LIRDPKKRTR ILASERVRWS LHTARQRLAK  1800
KRKYCQFFTR FGKCNKDDGK CPYIHDSSKI AVCTKYLNGL CSNPNCRLTH KVIPERMPDC  1860
SFFLQGLCTN KNCSYRHVNV NPKASTCEGF LKGYCADGNE CRKKHSYVCQ TFEETGTCPQ  1920
GPKCKLHHPK KRMKGKIKKR SREHRNVWGR YFVSKDVGVS EPITASAKHR AQNGDDIIGN  1980
DFVSINVSDE EAGESNNPPE QTTFYDSDPS ELDLDDLDEL IKPVRLLNKM KTNIY