PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000182.1_g000018.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 502aa MW: 55834.9 Da PI: 9.3274

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000182.1_g000018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	4e-53	156	283	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW Rmu_ssc0000182.1_g000018.1 156 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYW 237 79**************************.89***********8888999************************ PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk++l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl Rmu_ssc0000182.1_g000018.1 238 KATGTDKPILTSnGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 283 *****99867788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MKKRTGSSKP PTPKTRLVPF PIFLLSLTLF VSPLPRGPHF PLVAKPLRHP STCRPLTGDA 60 WFFILLPNRH HSVQPHHFSS SPILHHQFTP IYFFFVFITF DSPMESTDSS SGSGHPQLPE 120 FFITNLRLYI FFFVFITFDS PMESTDSSSG SGHPQLPPGF RFHPTDEELV VHYLKKKAAS 180 APLPVTIIAE VDLYKFDPWE LPSKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT 240 GTDKPILTSN GNQKVGVKKA LVFYGGKPPK GIKSNWIMHE YRLVNDDNSG AGLKPPDPTN 300 KKASLRLDDW VLCRIYKKNN AQRPMMECDH HKEEDSTTTN SMEGIFVQSM PKPSAPKPTN 360 YTALLENDED NFFDGILSSE GLQNSSHSNL SHQFMSSSKS DVVMPANNHT SKRQLASPFW 420 NEAGGSSSMG TNSSSSKRFH TDLNSGGGSG GGGGVDESNT SFVSMLNQLP QNAAFHHNSL 480 LGSLGDGVLR PQFHLPSMNW NS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MKKRTGSSKP PTPKTRLVPF PIFLLSLTLF VSPLPRGPHF PLVAKPLRHP STCRPLTGDA  60
WFFILLPNRH HSVQPHHFSS SPILHHQFTP IYFFFVFITF DSPMESTDSS SGSGHPQLPE  120
FFITNLRLYI FFFVFITFDS PMESTDSSSG SGHPQLPPGF RFHPTDEELV VHYLKKKAAS  180
APLPVTIIAE VDLYKFDPWE LPSKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT  240
GTDKPILTSN GNQKVGVKKA LVFYGGKPPK GIKSNWIMHE YRLVNDDNSG AGLKPPDPTN  300
KKASLRLDDW VLCRIYKKNN AQRPMMECDH HKEEDSTTTN SMEGIFVQSM PKPSAPKPTN  360
YTALLENDED NFFDGILSSE GLQNSSHSNL SHQFMSSSKS DVVMPANNHT SKRQLASPFW  420
NEAGGSSSMG TNSSSSKRFH TDLNSGGGSG GGGGVDESNT SFVSMLNQLP QNAAFHHNSL  480
LGSLGDGVLR PQFHLPSMNW NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-116	NAC family protein