PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000175.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 349aa    MW: 37791.4 Da    PI: 8.1506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000175.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41.1e-1387962128
                         NAM  62 skrdkkyatgkrknratk....sgyWkatgkdkevlskkgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                                 + ++ +++ ++r+  + +    s + katgkd e++s++++++g++ktLv+y+ ++++g +kt+W+mhey++
  Rmu_ssc0000175.1_g000004.1   8 AGQRCTNSAKRRQCTSSAqgigSIRMKATGKDLEIFSQRRKVIGTRKTLVLYDLKSKHGaKKTNWIMHEYKI 79 
                                 333333333333333333222244589*************************7755555279********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MCTCYFVAGQ RCTNSAKRRQ CTSSAQGIGS IRMKATGKDL EIFSQRRKVI GTRKTLVLYD  60
LKSKHGAKKT NWIMHEYKIE ENISPSTSTT RAPGDNRLDD WVLCKVYLSK MSKPKPNTGD  120
GGKTEVTDSE PLEQDLPVLE SPATPNLGEQ VNMSNESVQA LYNGIMTVPY GCATGYVSQE  180
VTNIGARSLA HHQQNLSLLP SFSQLPVINS VSSAISSLAG GDNNNGTITT PNDGSNGSEK  240
VINLHKKLHA DHQQDLPSLQ NYSKPSVINS VGSAIASLAG GPVFPDFQQV PRGFGAQFGT  300
NIASINGIQA HQSPHGIGPH QSRLSLDNGC LPPLPQCYYY YDDRECSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.15e-14NAC family protein