PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000162.1_g000019.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 571aa MW: 62033 Da PI: 8.6257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000162.1_g000019.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Rmu_ssc0000162.1_g000019.1 93 FVCEICNKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	15.4	5.3e-05	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Rmu_ssc0000162.1_g000019.1 169 WKCDKCSKKYAVQSDWKAHQKTC 191 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MSNITGDIEE GSFSSGNTAG EEVHQEKQLQ NHLHGSNSGG GSGGGRSNSN GSVTTQQQQQ 60 QPTKKKRNLP GTPDPSAEVI ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK 120 LRQRTSTEVR KRVYICPEPT CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV 180 QSDWKAHQKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKVNHG LIMNNNMGTH 240 NQMPDHLISS MPMNTNTSMG IGAGAISEYN NYDPKNPMKS LPEDLVPMPF KSIMNTNLPA 300 GGGMFSSSSG SLFGGPRSVN SSTSSSLQLS SNNSSSAGFN YLQDSKNGCG GSPNITGSAQ 360 MSATALLQKA AQMGATASNT TINSPMMQKS FVTSMAGPEN HHLLSTNSIS NVTRPPYDHH 420 PHFQQVQQQL PDHHQMVGMH GFTNQLFGDA NATSAASSAA MSDHMGMFSQ VVFNMGSGGS 480 HEQNQALLRN LEQQRFGGNG GEGGDMTTLD LLGLGGGGGA RPQPQNLHEQ HQQRLDLEAM 540 SQPRMPMMNP FHQQQQRSHG DSPVESNPFG M

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MSNITGDIEE GSFSSGNTAG EEVHQEKQLQ NHLHGSNSGG GSGGGRSNSN GSVTTQQQQQ  60
QPTKKKRNLP GTPDPSAEVI ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LRQRTSTEVR KRVYICPEPT CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV  180
QSDWKAHQKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKVNHG LIMNNNMGTH  240
NQMPDHLISS MPMNTNTSMG IGAGAISEYN NYDPKNPMKS LPEDLVPMPF KSIMNTNLPA  300
GGGMFSSSSG SLFGGPRSVN SSTSSSLQLS SNNSSSAGFN YLQDSKNGCG GSPNITGSAQ  360
MSATALLQKA AQMGATASNT TINSPMMQKS FVTSMAGPEN HHLLSTNSIS NVTRPPYDHH  420
PHFQQVQQQL PDHHQMVGMH GFTNQLFGDA NATSAASSAA MSDHMGMFSQ VVFNMGSGGS  480
HEQNQALLRN LEQQRFGGNG GEGGDMTTLD LLGLGGGGGA RPQPQNLHEQ HQQRLDLEAM  540
SQPRMPMMNP FHQQQQRSHG DSPVESNPFG M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	9e-97	C2H2 family protein