PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000162.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 644aa    MW: 71742.1 Da    PI: 6.5818
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000162.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.6e-2970153186
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e gf+rs+k+Ckek+en+ k+++++keg+ +++  + +t+++fd
  Rmu_ssc0000162.1_g000013.1  70 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKS--DGKTYRFFD 150
                                 8********************************************************************964..5557***** PP

                    trihelix  84 qle 86 
                                 ql+
  Rmu_ssc0000162.1_g000013.1 151 QLQ 153
                                 *98 PP
2trihelix100.81.1e-31464548186
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 rW+k ev+ Li++rr+++++++++  k+plWee+s  m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+
  Rmu_ssc0000162.1_g000013.1 464 RWPKVEVHSLIKLRRSLDSKYQENGPKGPLWEEISGEMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFH 545
                                 8*********************************************************************8.99********* PP

                    trihelix  84 qle 86 
                                  l+
  Rmu_ssc0000162.1_g000013.1 546 LLD 548
                                 987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    
MLGDLGSSSD ATTATAMAAE PLGAHEGGGG DGGVGSNSGE EEKNNYSRSG GGGGGGGGEE  60
FGDRSFGGNR WPRQETLALL KIRSDMDVAF RDASVKGPLW EEVSRKLAEL GFHRSAKKCK  120
EKFENVYKYH RRTKEGRTGK SDGKTYRFFD QLQALENQPQ TPTTPNSTTT HQPRPQPTIA  180
MAVSNPPIPT ISHINSTSTN STNTVPSAAP HQGIATPTIP SSLFPPTNPI IFPPAPQPPP  240
QQNPTSHHQH HQATTFVPPS SLPSISSTDL MSNSTSSSTS SDEEMEGRAK RKRKWKDFFE  300
TLMKEVVRKQ EDLQKRFLEA IEKREQERMA REEAWRLQEL ARINREREIL AQERSIAAAK  360
DTAVMSFLQK IAEQQPQHNP QATPTNPNNH LLTSQTPQPQ PPPAQQSVAL PPPQRQQTTP  420
PPTLQISQAP ITTFEITPRA NGENNNNNSN NNLVSPTTTP SSSRWPKVEV HSLIKLRRSL  480
DSKYQENGPK GPLWEEISGE MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT  540
CPYFHLLDSL YRERNIGNNN DNNNNSPKPE NAAPLMVRPE QQWQPPNRVE PEMESERMDQ  600
NHEEEDRDGD EDEDEDEEED EGNYEIVANK GASVSVSVGA TTAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-81Trihelix family protein