PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000155.1_g000034.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 289aa    MW: 32148.2 Da    PI: 8.369
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000155.1_g000034.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.6e-34271172101
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d++++++i ws +g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++
  Rmu_ssc0000155.1_g000034.1  27 FLSKTYQLVDDPAIDDVIAWSGDGSSFVVKNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKIIPDR---------WEFSND 100
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkk 101
                                  F++g+k+ll++i+r++
  Rmu_ssc0000155.1_g000034.1 101 CFRRGEKRLLCEIQRRR 117
                                 ***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MAPPPTVEQN GESTSGESTQ RGSPTPFLSK TYQLVDDPAI DDVIAWSGDG SSFVVKNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKI IPDRWEFSND CFRRGEKRLL CEIQRRRITP  120
PAAAPAVIPA KPITSPANSG EEQVTTSSSS SPRPRIPWQL VEENERLRKE NLRLTKELAE  180
IKSLCHNIFS LVSNYACNKP PEGGLGELTQ LSLMPGERFS GGETSPKIFG VEIGAKRARE  240
EGGGGDEETD LRLRQPSGGG VVKSEPSDVE HREKPWLKQC HRANQRVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-67HSF family protein