PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000154.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 306aa MW: 34214.2 Da PI: 6.8125

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000154.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.1e-06	118	137	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ Rmu_ssc0000154.1_g000005.1 118 FSCPLCFKTFNRYNNLQMHM 137 89*****************9 PP
2	zf-C2H2	10.9	0.0014	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgks k + ++H +++ Rmu_ssc0000154.1_g000005.1 202 FICKRCGKSLALKGDWRTHEKNC 224 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MYNNSSCVVQ SQPSSSHDSH PKEALPLINK LNPRGAQLEE EEEGTSHNPK NKADVDDDVA 60 LRIGLPSSNY SSDPGSGGME VDQSNDDELG AAASVGRLNK GHYWIPTPSQ ILNGPTQFSC 120 PLCFKTFNRY NNLQMHMWGH GSQYRKGPDS LKGNKPTAML RLPCYCCAQG CKHNIDHPRA 180 KQLKDFRTLQ AHYKRKHGIR SFICKRCGKS LALKGDWRTH EKNCGKIWHC ICGSEFKHKR 240 SLKDHIKSFG EGHGAFDIEY FEEDDEPASE IEHMCGTVFD TSGSPCWFGT LDELMDDGVE 300 PSETPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-113	C2H2 family protein