PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000150.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SBP
Protein Properties Length: 618aa    MW: 68594.4 Da    PI: 10.2655
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000150.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.3e-41100175176
                                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                 +CqvegC+ dls+ak+yhr+h++C  hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+
  Rmu_ssc0000150.1_g000023.1 100 RCQVEGCNIDLSSAKDYHRKHRICANHSKSPKVVVNGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKP 175
                                 6*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MIQYCSLYSY SGFALLQSPD FVDKKQSARE AEALGSSPTH EISAGSGEPL LSLKLGKRMY  60
FEDVCAGNNA KTSAVSVIST PMGTKAKRFK SIGQSTAATR CQVEGCNIDL SSAKDYHRKH  120
RICANHSKSP KVVVNGVERR FCQQCSRFHG LSEFDEKKRS CRRRLSDHNA RRRKPLPGAL  180
RDQARLSSSL YSTDGRQDMS LVLDQAPCVY SRNATNLSWD GACSFRLTPT KDYFPNPAKG  240
GGTSRQLNLA ENRTSSSLAM LYQDSSRLPP SKGTASQVLN RGAEESMISF NLDAPQNLNR  300
ALSLLSTSSW ASCEAKPVSL DNTNHSYHTN MPRPVMQAMN QGLPLSSEYW QNEQPSLDTT  360
QVNVSHSQSN GSNQYQDLHL FKGPYEISPF LRNLETALVT PSCSNRMEEF GGFRLRMLDS  420
SGKSLVNLFL RMLDSSGKSL VNLFLRMLDS SGKSLVNLFL RMLDSSGKSL VNLFLRMLDS  480
SGKSLVNLFL RMLDSSGKSL VNLFLRMLDS SGKSLVNLFL RMLDSSGKSL VNLFLRMLDS  540
SGKSLVNLFL RMLDSSGKSL VNLFLRMLDS SGKSLVNLFL RMLDSSGKSL VNLFLRMLDS  600
WRPNPLMAAT NWSTRVGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157174KKRSCRRRLSDHNARRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.13e-65SBP family protein