PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000148.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 529aa MW: 60257.7 Da PI: 7.5296

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000148.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.8	4.4e-11	31	107	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+ l L++ ++ +e + r++ + ++W+ v++++ + g+ rs q + kwe l +yk i +++++ s s + Rmu_ssc0000148.1_g000005.1 31 WTETDLLILVNEVTAVEADCRKEFSSFQKWKIVAQNCTALGVPRSLDQYRRKWEALLHDYKVIDHWNSQS-RASASYW 107 ********************************************************************95.4444455 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MKGEQTLPEF HHSNGGGSGS RRTRSQVAPD WTETDLLILV NEVTAVEADC RKEFSSFQKW 60 KIVAQNCTAL GVPRSLDQYR RKWEALLHDY KVIDHWNSQS RASASYWALE SDRRKQFGLP 120 QSFDRELFEA IGGYEKVQAN QSDTEEGEAE ADVADEYEEA VEPESKRRRR PSTQQKWSPI 180 QNPARRSMVK KPVQKPHQTR AEERHVQKPR HSHAAEKPVQ KACQTHVEDK SVQKTRPMRV 240 EEKTIVKPVQ TNVAEKPGEN HAEEKPCQTH EEGEPVEKAR QTHAQEKPVE KPPQTHAKEK 300 PHQTHAEESY QINAEGKPVK NPPKIQAEEN VVGKSCQTHV EGKPVEKPHQ THAEEKHVES 360 CLEAIPMENL AEEKPHQTHS QEKPLGSCLD AIPTKMAEEG PQKSWVKKKH KASEEQPGGS 420 CLEVIPMKSM AEKKTLKSSL KRKQQSTQME EKITGIEEQK QIMAMKLQWS AELIRAIVTE 480 NADREAADEK SMKDLQADLV RRQGDQVIAC LADIVKTLNQ VHRLVQERK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MKGEQTLPEF HHSNGGGSGS RRTRSQVAPD WTETDLLILV NEVTAVEADC RKEFSSFQKW  60
KIVAQNCTAL GVPRSLDQYR RKWEALLHDY KVIDHWNSQS RASASYWALE SDRRKQFGLP  120
QSFDRELFEA IGGYEKVQAN QSDTEEGEAE ADVADEYEEA VEPESKRRRR PSTQQKWSPI  180
QNPARRSMVK KPVQKPHQTR AEERHVQKPR HSHAAEKPVQ KACQTHVEDK SVQKTRPMRV  240
EEKTIVKPVQ TNVAEKPGEN HAEEKPCQTH EEGEPVEKAR QTHAQEKPVE KPPQTHAKEK  300
PHQTHAEESY QINAEGKPVK NPPKIQAEEN VVGKSCQTHV EGKPVEKPHQ THAEEKHVES  360
CLEAIPMENL AEEKPHQTHS QEKPLGSCLD AIPTKMAEEG PQKSWVKKKH KASEEQPGGS  420
CLEVIPMKSM AEKKTLKSSL KRKQQSTQME EKITGIEEQK QIMAMKLQWS AELIRAIVTE  480
NADREAADEK SMKDLQADLV RRQGDQVIAC LADIVKTLNQ VHRLVQERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-39	Trihelix family protein