PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000126.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 311aa MW: 34437.8 Da PI: 10.5556

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000126.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	30.3	1.4e-09	223	272	38	80
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaessss 80 +LG+d++sk+++W +++ak+ i+el ++ +++s+s + + s+ Rmu_ssc0000126.1_g000005.1 223 RLGYDRPSKAVDWVIKKAKATIDELDELppwnpnsisvQTTSSSTV---HISV 272 8***************************765554443322222111...1111 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MKTEPLTTRW GPEVAGIAGN RQKLQTVAEG NLASIRAFPA KSLKTKVTRV LGGRRRSSSD 60 RLHAARYSSA PTRRHWIGVK DIFRYLRCTI DIGLFYPYKE MMDSDPSHTR YAANAGLRSL 120 SPSQNDMCFG SHQGEAQTSG GDVYMFTPKR EGKKNGGEPQ QPPPPRNDVV FRCFSIGFGY 180 KDCFFLHRQR NSGGSRPHSK GHRPEGPSQQ GLHSQSPRDH RVRLGYDRPS KAVDWVIKKA 240 KATIDELDEL PPWNPNSISV QTTSSSTVHI SVMQDTQNAS LHFSMVEALS SLSANRRGAM 300 VGSSGVAELV N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	6e-14	TCP family protein