PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000125.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 561aa    MW: 62731.2 Da    PI: 6.0985
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000125.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-2157112156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 ++k +++t++q++eLe++F+++++p++++r +L+++lgL+++qVk+WFqNrR+++k
  Rmu_ssc0000125.1_g000012.1  57 KKKYHRHTPSQIQELESFFKECPHPDEKQRLDLSRRLGLETKQVKFWFQNRRTQMK 112
                                 79999************************************************999 PP
2START174.56.7e-552684861206
                                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdet 75 
                                 ela ea++elv++++a+ p+W+kss    e +n + + ++f+   +      ++a+r+s +v+ ++  lve+++d + +W+ +
  Rmu_ssc0000125.1_g000012.1 268 ELAGEAMDELVRMVQADTPLWMKSSdggsETLNVELY-RTFSCISTrqsgLVTDASRDSCMVIINSLALVETMMDAN-RWTDM 348
                                 5799*********************998544444444.4443222245669**************************.***** PP

                                 -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                       START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147
                                 ++    +a+t+  issg      g++q m aelq+lsplvp R   f+R+++q+ +g+w++vdvS+d +q+ +    +v +++
  Rmu_ssc0000125.1_g000012.1 349 FPtlvaRASTIGMISSGpngtrnGTIQMMHAELQMLSPLVPvRPLKFLRFSKQHAEGVWAVVDVSIDIQQDAS----SVNCRR 427
                                 ***********************************************************************87....69**** PP

                                 SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 lpSg+++++++ng+skvtw+eh +++++ +h+ll++l++sg+ +ga++w+atl+r ce+
  Rmu_ssc0000125.1_g000012.1 428 LPSGFIVQDMPNGYSKVTWIEHLEYNESGVHQLLQPLLRSGIGFGAQRWLATLRRECES 486
                                 *********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    
MDGHNELDLI AESFDPGIIG RLREEEFDQS RSGSDHFDGA SGDDQDPVDE DDRPRRKKKY  60
HRHTPSQIQE LESFFKECPH PDEKQRLDLS RRLGLETKQV KFWFQNRRTQ MKTQLERHEN  120
IILRQENDKL RAENGVMKEA MSNPICHNCG GPAIPGQISF DEHQLRIENA RLNDELSRIC  180
TLAQKFLGRP ISNLAAPRSL PSSTARLDLA MGINGMGCLN AGGSNQLSMG FELGDGVGSS  240
SPVMPLMKTV MGMPNDLQHV TDRHVYLELA GEAMDELVRM VQADTPLWMK SSDGGSETLN  300
VELYRTFSCI STRQSGLVTD ASRDSCMVII NSLALVETMM DANRWTDMFP TLVARASTIG  360
MISSGPNGTR NGTIQMMHAE LQMLSPLVPV RPLKFLRFSK QHAEGVWAVV DVSIDIQQDA  420
SSVNCRRLPS GFIVQDMPNG YSKVTWIEHL EYNESGVHQL LQPLLRSGIG FGAQRWLATL  480
RRECESLTFL MSSTNPNEVP RAFVLGFVAH QCANLSMLFF EFILNPAGEQ RIGRGHEESQ  540
GLTFPLESGK PPLCTKANTR T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RPRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.20.0HD-ZIP family protein