PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000122.1_g000021.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 620aa MW: 69948.9 Da PI: 4.6299

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000122.1_g000021.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.5e-53	9	143	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksg 81 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k ePwdLpk ++k++++ew+fF++rd+ky++g+r+nrat++g Rmu_ssc0000122.1_g000021.1 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPEIDVCKREPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRATDAG 90 699**********************999.99***********5458899999********************* PP NAM 82 yWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 yWkatgkd++++s+ ++ lvg+kktLvfy+grapkge+t+W+mheyr Rmu_ssc0000122.1_g000021.1 91 YWKATGKDRTIKSRqfksatnNTGLVGMKKTLVFYRGRAPKGERTSWIMHEYR 143 *********988776665566*************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MAVLSMESLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPEIDVCKRE PWDLPKLSMI 60 KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAT NNTGLVGMKK 120 TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAFV LCRLFHKPEE KAEVLKYDEV 180 DQPGLSPTTS PDETSSDIVQ ESATPDMKGG KESEGISSWN DSFDHMTPDT LTVPPNDSYM 240 ASDVEVYGPE DTIFPGHYHL PGEVGFYDPN EPTIDCKIFS PFNAELDYVG SPLEFGNYNN 300 GSHFQDGTCE QDVYLPEVFD EFGNKQYESS CEDSTSQKNL VGVSEAYLSD HSFMLQAIPP 360 ENLSLNAAWG YTDTKMTERY LDMRARGLSN EQFDTSYQAE APASIYDHKP RMENIGYPGN 420 SYADSAVSNN LDESTNWKNG DNHSSDQVDR PRIMIRSRLP QERPNSNFLN QGEACRRIRL 480 AVLSNHSKEE DEGHSIITEA RETVQESLTS DEREEVHAIN DEEEVTSRDY SANNDSHLVG 540 KTGISCNTRQ PPEASNSDKP VTQGTAPRRN DLAMTSSPGS VADSNVRDTK HGQEDEVESS 600 IIEVRIISEA RQAFRVVCLN

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MAVLSMESLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPEIDVCKRE PWDLPKLSMI  60
KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAT NNTGLVGMKK  120
TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAFV LCRLFHKPEE KAEVLKYDEV  180
DQPGLSPTTS PDETSSDIVQ ESATPDMKGG KESEGISSWN DSFDHMTPDT LTVPPNDSYM  240
ASDVEVYGPE DTIFPGHYHL PGEVGFYDPN EPTIDCKIFS PFNAELDYVG SPLEFGNYNN  300
GSHFQDGTCE QDVYLPEVFD EFGNKQYESS CEDSTSQKNL VGVSEAYLSD HSFMLQAIPP  360
ENLSLNAAWG YTDTKMTERY LDMRARGLSN EQFDTSYQAE APASIYDHKP RMENIGYPGN  420
SYADSAVSNN LDESTNWKNG DNHSSDQVDR PRIMIRSRLP QERPNSNFLN QGEACRRIRL  480
AVLSNHSKEE DEGHSIITEA RETVQESLTS DEREEVHAIN DEEEVTSRDY SANNDSHLVG  540
KTGISCNTRQ PPEASNSDKP VTQGTAPRRN DLAMTSSPGS VADSNVRDTK HGQEDEVESS  600
IIEVRIISEA RQAFRVVCLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-120	NAC family protein