PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000122.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 478aa    MW: 51887 Da    PI: 7.3121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000122.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00012121143123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 + Cp+Cgk F++ ++   H  ++
  Rmu_ssc0000122.1_g000008.1 121 FDCPICGKAFRSEDEVSIHVDSC 143
                                 77*************99998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MDDMKDKVKG FIKNPFSSSS SGKFKGQGRV LGSSSAGPAN SPILGRASQP PQSKPNPIST  60
SKSSSSTSKP SPQRTQSLDQ KRPELPTEPK PNRKPQQGFD PFDALITPGK RSQNGFTLNV  120
FDCPICGKAF RSEDEVSIHV DSCVNNSADN ESAEGVSGSA ESVETSRSGL EACIGTFASG  180
NPGSGSVEVV LRLLRNIVRE PENVKFRKVR MSNPKIREAI GEVVGGIELL EFVGFELKEE  240
EGEMWAVMEV PSAEQIGVIK KGIELLEPPK VQEPQKKEKL TSAGSGDLDE QIEPKKVDRQ  300
TRVFFSVSES VAAKIELPES FYSLSAMELK REAEARKKKI DDSQMLIPKS YREKQAKAAK  360
KRYTKTVIRV QFPDGVVLQG VFSPAEPTSA LYEYVSLALK EPCLEFELLN PAAIKRRVIP  420
HSPAAGERPA TLADEDLVPS ALVKFKPIET DSIVFTGLCN ELLQISEPLG SGSAVGHA