PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000116.1_g000064.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 310aa MW: 32552.8 Da PI: 9.9548

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000116.1_g000064.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.1	1.1e-36	53	131	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec...e 74 +k+++++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a s c + Rmu_ssc0000116.1_g000064.1 53 VVKRSSTKDRHTKVEGRGRRVRMPAACAARVFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAiavSVCgtlK 131 5799************************************************************888884444444321 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MEPNQRQSLE ETDGITNPSV SGQQFPAVAK KEEFDDGSLS MGLIPVPAPA KPVVKRSSTK 60 DRHTKVEGRG RRVRMPAACA ARVFQLTREL GHKSDGETIR WLLEHAEPAI IAATGTGTVP 120 AIAVSVCGTL KIPTSSLANP NGEVSELPRK KRKLHCNSDF VDVEELSSIS SGLAPIAPVN 180 YGGGGGGALF PMWQFGANVP FFMFPNSGWA IPSDSVSGHT IFDLQGRPIS NFPVTALQSG 240 VQVCGDVDVQ ATSGSISSGG GGGSGSTSLG ASNSNAKGLG FLHRRMGLFD RAAGSKRLRG 300 KFGRYSAVKY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	PRKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-59	TCP family protein