PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000116.1_g000035.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 975aa MW: 109459 Da PI: 7.2541

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000116.1_g000035.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27	1.2e-08	206	273	16	83
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 ++ + r+k ++ + +ev++++++ g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf+ Rmu_ssc0000116.1_g000035.1 206 DITGQPTRAKTRADKDKEVAEFLQKNGINRDAKTAGTKWDNMLGEFRKVYEWERGAEREQIGNKSYFR 273 56667778899999*****************************************9888888888885 PP

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence
MGETKGDNPN KQQQQPQQIS ASPNDPLEEA SPLTVVVTGA TAPFNIPAPL YVPISGATSS 60 SLPFDQQQFE AVNPKRPRYT STGQWKLLPS PSSQQKQTPT QTPSPNPKTH PQSHTTTGAS 120 SSDTASSPPH SPLPSLSATS GQDTTKTEGE EQNPSLHRSQ FRRGKYVSPV WKPHEMLWLA 180 KAWRAVYQSQ GSDGSGSSSR TEHHSDITGQ PTRAKTRADK DKEVAEFLQK NGINRDAKTA 240 GTKWDNMLGE FRKVYEWERG AEREQIGNKS YFRLSPYERK LHRLPASFDE EVFDELAQFM 300 GSRMRTPPIS RTSDSTRTQS LYVTTSTILP QPPSFRDDDL PLSGRARQLM IMSGGGEVPF 360 YPSGRSGSLL GFDHLPPYHH QSSLDYAAGV SSSTSSLTKE LRRIGKIRMT WEESVSLWAE 420 EGEHHRGRVK IQGGSSFLNA DELAFFDDSM VACTMEAFED GTLRGFSVDR FVSGQQVKVF 480 GRRKPSTPAM PPWEFQDPSE YYITCLRVPP PSLPRLSELS SYLLQPPPEE LRFPLRKDVY 540 RDLPQGRETF FTASNDSLDC RAITYDIVSP IIRSNYGLSA ATSRDSFIGL WDDCINRFVS 600 KFSCVDMVFI RKATSSISIT EALQDQWPNV TGFVKNYCLW RGEEIDQVRD SHIHPSKSLA 660 EKLQWTYNDL PYIFGYYSIG NMVTFCALSK GGQDRIIETN LHTIDLSLPS DRLKALVLCY 720 RVAGLLPLLA DRCFNINSGT TSTSNGAAAS YKFMFGPYSD FERVDLGNGN IVELTPNTVT 780 RFFSNQRKWL AVKEIYDFLD HRIPHAEYIH RSSEKDLALV FKPRGCKFKP RNCDELVEAL 840 KYVTKALVAL HDLSFMHRDI CWDKVMRSTE RDNEWLLCGF DEAVGAPQLN PYQVAAAERG 900 EHAPELERAL HGVKVDVWGV GHLVRTCGLA GVPKMLRELQ NRCLDQNPEL RPTAADCYHH 960 LLQLQSSLSV VTAMM

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence

MGETKGDNPN KQQQQPQQIS ASPNDPLEEA SPLTVVVTGA TAPFNIPAPL YVPISGATSS  60
SLPFDQQQFE AVNPKRPRYT STGQWKLLPS PSSQQKQTPT QTPSPNPKTH PQSHTTTGAS  120
SSDTASSPPH SPLPSLSATS GQDTTKTEGE EQNPSLHRSQ FRRGKYVSPV WKPHEMLWLA  180
KAWRAVYQSQ GSDGSGSSSR TEHHSDITGQ PTRAKTRADK DKEVAEFLQK NGINRDAKTA  240
GTKWDNMLGE FRKVYEWERG AEREQIGNKS YFRLSPYERK LHRLPASFDE EVFDELAQFM  300
GSRMRTPPIS RTSDSTRTQS LYVTTSTILP QPPSFRDDDL PLSGRARQLM IMSGGGEVPF  360
YPSGRSGSLL GFDHLPPYHH QSSLDYAAGV SSSTSSLTKE LRRIGKIRMT WEESVSLWAE  420
EGEHHRGRVK IQGGSSFLNA DELAFFDDSM VACTMEAFED GTLRGFSVDR FVSGQQVKVF  480
GRRKPSTPAM PPWEFQDPSE YYITCLRVPP PSLPRLSELS SYLLQPPPEE LRFPLRKDVY  540
RDLPQGRETF FTASNDSLDC RAITYDIVSP IIRSNYGLSA ATSRDSFIGL WDDCINRFVS  600
KFSCVDMVFI RKATSSISIT EALQDQWPNV TGFVKNYCLW RGEEIDQVRD SHIHPSKSLA  660
EKLQWTYNDL PYIFGYYSIG NMVTFCALSK GGQDRIIETN LHTIDLSLPS DRLKALVLCY  720
RVAGLLPLLA DRCFNINSGT TSTSNGAAAS YKFMFGPYSD FERVDLGNGN IVELTPNTVT  780
RFFSNQRKWL AVKEIYDFLD HRIPHAEYIH RSSEKDLALV FKPRGCKFKP RNCDELVEAL  840
KYVTKALVAL HDLSFMHRDI CWDKVMRSTE RDNEWLLCGF DEAVGAPQLN PYQVAAAERG  900
EHAPELERAL HGVKVDVWGV GHLVRTCGLA GVPKMLRELQ NRCLDQNPEL RPTAADCYHH  960
LLQLQSSLSV VTAMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein