PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000116.1_g000021.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 251aa    MW: 28130.9 Da    PI: 6.0373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000116.1_g000021.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-0873123355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                  +   +Er+RR+ +  + + Lr+llP  +    ++K s +e   +Av+YIk+L+
  Rmu_ssc0000116.1_g000021.1  73 IMRRDNERQRRQVMAIRTASLRSLLPLeL---IKGKRSISEHINEAVNYIKQLK 123
                                 566789*********************78...********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MFPFPHDHQS KDMELQISSS TPHQEDFMQQ GLIMMRGSHD VLPSDLQGHS LSNINISEAN  60
INNMAADSDE RKIMRRDNER QRRQVMAIRT ASLRSLLPLE LIKGKRSISE HINEAVNYIK  120
QLKEKIQELN AKREELRRVY KHYSSSAHDF SPEIDENLGT KSTSNIMVGP TCWGGVEIVA  180
STNGTNCSEL EGFSLSGVLK ALLAEGLTVV ECASTTANQR LIHSIQCEVD YLACLDLSEL  240
QLKLNFLCNS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-36bHLH family protein