PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000111.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 640aa MW: 72562 Da PI: 4.6247

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000111.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	295	315	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ Rmu_ssc0000111.1_g000001.1 295 YCVVCGKKFKSEKQWKNHEQS 315 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV 60 LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA 120 DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD 180 QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER 240 ERKKKEEREK KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DEEEEEEERK RNELYCVVCG 300 KKFKSEKQWK NHEQSKKHKD KIAEFRESIG DEELDEEEVD DLGDQMREGL EIGEEDDGAG 360 VSASDDEFYD FGDEILREKL DEDDNGGGGD DDDDEMELLQ AMAARHKSRE KLDGDGDADD 420 DDGEIELDDE MELLQAMAAR HKSREKLYGD GDGGDDDGEM LKAMAARQKS RENVGEAVGV 480 DDGDSGSEDE MDVLEALVAG RKSRKNAASR VEVEDPLVTG VHVDNDSNGV ESIPMEYENR 540 KPTRRKGKSK KSGGETKRVD MNEISNGQSE AASENDNSDV KESTSDSMVE MASTNEKQDD 600 QIARKKKSSK QTVEKKKENV KKEANGKSKS SSKGKKAKVR

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV  60
LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA  120
DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD  180
QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER  240
ERKKKEEREK KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DEEEEEEERK RNELYCVVCG  300
KKFKSEKQWK NHEQSKKHKD KIAEFRESIG DEELDEEEVD DLGDQMREGL EIGEEDDGAG  360
VSASDDEFYD FGDEILREKL DEDDNGGGGD DDDDEMELLQ AMAARHKSRE KLDGDGDADD  420
DDGEIELDDE MELLQAMAAR HKSREKLYGD GDGGDDDGEM LKAMAARQKS RENVGEAVGV  480
DDGDSGSEDE MDVLEALVAG RKSRKNAASR VEVEDPLVTG VHVDNDSNGV ESIPMEYENR  540
KPTRRKGKSK KSGGETKRVD MNEISNGQSE AASENDNSDV KESTSDSMVE MASTNEKQDD  600
QIARKKKSSK QTVEKKKENV KKEANGKSKS SSKGKKAKVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK
2	201	209	KKQRKKAKR
3	223	245	KKRDKRVMDMMVKREEERERKKK
4	247	253	EREKKKK
5	604	641	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-147	C2H2 family protein