PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000087.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 251aa    MW: 26949.3 Da    PI: 4.231
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000087.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-173999357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                +R+t+t+ ql++L+ l++   ++yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_ssc0000087.1_g000024.1 39 NRWTPTPAQLRILQGLYYDkgHKYPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARERQ 99
                                7****************9557**************************************97 PP
2Wus_type_Homeobox93.91.4e-3037100264
           Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                 +++RWtPtp Q++iL+ ly+ +G + P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaRerqk
  Rmu_ssc0000087.1_g000024.1  37 TTNRWTPTPAQLRILQGLYYdKGHKYPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARERQK 100
                                 579***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MELQTQQQME LQAQQQVEDG GNNQAAGSSA NTPIRPTTNR WTPTPAQLRI LQGLYYDKGH  60
KYPTPEQIQE ICLHLKPYGQ IEDKNVFFWF QNLKARERQK LNEFQNVRVG GSLDLNFGST  120
SSTDDGRSID LNFGSTGSTG DDGLIDLTLG SCVGYGVDPN SSSPFNANIS TTSFGPTGGQ  180
SSMEQRGGDH QEVETLPLFP VHGEDVLGNP NTTSEEGSAF GYYSSGSGGY NSGSPVSLEL  240
SLNPSGAADL A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-22WOX family protein