PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000052.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 670aa    MW: 76653.3 Da    PI: 10.6053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000052.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-131912621691
                                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                 + lp  f+++h +++    + +le+++g +Wev+     + ++++l+ GW +F++ ng++ gD ++F+l++ +++ 
  Rmu_ssc0000052.1_g000015.1 191 VDLPTGFCRKHLLPP-DYYKFILENTEGDRWEVNG--VPSNNTIMLSCGWVSFARGNGVEIGDDCLFELES-KSKM 262
                                 569********7775.6679***************..999999*************************987.4443 PP
2B348.51.6e-15310404199
                                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                 ffkv +p +++++  l++p +f+++h   +++  +  tl+l+ +   sW+v++ +rk++g ++l++GW+eF ++  L +++f+
  Rmu_ssc0000052.1_g000015.1 310 FFKVILPGYSTEH--LRFPPRFLRKHivnKLS--KRATLKLKRSPAWSWKVEV-MRKSGGDVYLKDGWQEFLRDACLGDKEFL 387
                                 7888866666665..9**********976555..4558999999999999999.6888888********************** PP

                                 EEEE-SSSEE..EEEEE-S CS
                          B3  81 vFkldgrsefelvvkvfrk 99 
                                 vF ++g+++f   +kv++k
  Rmu_ssc0000052.1_g000015.1 388 VFIYNGKMRF--SIKVYDK 404
                                 ****999999..7777776 PP
3B339.21.2e-125876681297
                                 HTT-EE--HHH.HTT..---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                          B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                 +++++++pk+f  e+  +g   +   + l++++g +W +vkl  +++ ++ ++tkGW  F+ an++k+g  + F++ +  e +
  Rmu_ssc0000052.1_g000015.1 587 RLSQVYMPKPFYGENlsSG---NYEVIYLKNSEGTKWyKVKL--SRYHNTAFMTKGWGAFAVANQVKVGSLCQFQFLK--ENR 662
                                 567899******9996533...3457********99867999..*******************************766..455 PP

                                 .EEEEE CS
                          B3  92 lvvkvf 97 
                                  vv+++
  Rmu_ssc0000052.1_g000015.1 663 IVVHIL 668
                                 688876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MARAGFNNGG MVEQKGPTFF KIIKPGFNTD HLHILNELSI RATLTLSSSA DSSWNVRAHK  60
IGRDIYLKEG WQEFLRDNSL AEHTLNGESS NSTKRPRGRP RKSGDAAEHT LNGESSNSTK  120
RPRGRPRKSG DAAEHTLNGE SRNSTKRPRR RPRKSGDAAE HTPNGESSIP IEYTESRFPA  180
FIRTINKVYG VDLPTGFCRK HLLPPDYYKF ILENTEGDRW EVNGVPSNNT IMLSCGWVSF  240
ARGNGVEIGD DCLFELESKS KMIKFKLITN FSPNKSHCQI RSLKSQVQAL WGKEMVKISR  300
NGVEEKKPSF FKVILPGYST EHLRFPPRFL RKHIVNKLSK RATLKLKRSP AWSWKVEVMR  360
KSGGDVYLKD GWQEFLRDAC LGDKEFLVFI YNGKMRFSIK VYDKNGCERM DFPDIKTHQH  420
TTSSRSTKRP VRRPRKSSAG NSADKLKKVK EEEVDCNNTT DKCASKSTEM LRGRPTKTTE  480
EYTKRRLGRP TKPTSKSTKR PPVRATKKTS ESTKRPPITP AKTTFESTKR PRGRPRKYPV  540
TCKDSGKHSP NSEFDVLREV KEEEEDFQES GELFKSKLQY FTCKINRLSQ VYMPKPFYGE  600
NLSSGNYEVI YLKNSEGTKW YKVKLSRYHN TAFMTKGWGA FAVANQVKVG SLCQFQFLKE  660
NRIVVHILNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102KRPRGRPRK
2120128KRPRGRPRK
3146154KRPRRRPRK
4147153RPRRRPR
5149154RRRPRK
6529537KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.14e-14B3 family protein