PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000036.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 763aa MW: 84707.4 Da PI: 8.0189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000036.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.4	1.2e-20	671	751	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W+ +ev++ ie+r + ++r++ k +++lWee+s+++ ++g++rsp qCk+ w++l ++y++ k g+++r +++py++ Rmu_ssc0000036.1_g000001.1 671 KWKPEEVKKFIEMRGKQHSRFQVVKGRMALWEEISRNLLAEGINRSPGQCKSLWSSLVQKYEESKSGKRSR-----KSWPYYE 748 7******************************************************************96.....56* PP trihelix 84 qle 86 +++ Rmu_ssc0000036.1_g000001.1 749 EMD 751 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence
MEQFYEGRDG PPLRVLPIGG LGEIGMNCML VGNYDRYILI DAGIMFPDFD ELGVQKIIPD 60 TTFIRKWKHK IEAIVITHGH EDHIGALPWV IPALDPSTPI FASSFTMELI RKRLKENGIF 120 VPSRLKMFRT KRKFMAGPFE IEPIRVTHSI PDCCGLVLRC ADGTILHTGD WKIDESPLDG 180 QGFDREGLEE LSKEGVTLMM SDSTNVLSPG RTTSESSVAD ALMRHISAAQ GRVITTQFAS 240 NIHRLGSVKA AADATGRKLV FVGMSLRTYL DAAWRDGKAP IDPSTLVKVE DIDSYAPKDL 300 LIVTTGSQAE PRAALNLASF GSSHSVKLTK EDIILYSAKV IPGNESRVMK MLNRISDMGS 360 TIVMGKNEGL HTSGHGYRGE LEEVLRIVKP QHFLPIHGEL LFLKEHELLG RSTGIHHTTV 420 IKNGEMLGVS HLRNRRVLSN GFTLLGKENL QLKYSDGDKA FGTSSDLCVD ERLKIALDGI 480 IVISMEILRP QNVNGLAESS IKGKIRITTR CLWLDKGKLY DALYKAAHAA LSSCPINCPL 540 PHMERTVSEV LRKLVRKYSG KRPEVIAIAM ENPTAVLADE VSTRLSGKPH VDDGGEVKAP 600 LPVEVSTVNP EKLSSDTKEP DDFWNAMVKL SAGDKLAEDK DGLVLQEEHV KKDDSESTET 660 PNPSKPVKRN KWKPEEVKKF IEMRGKQHSR FQVVKGRMAL WEEISRNLLA EGINRSPGQC 720 KSLWSSLVQK YEESKSGKRS RKSWPYYEEM DGALSDSEAM ATK

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence

MEQFYEGRDG PPLRVLPIGG LGEIGMNCML VGNYDRYILI DAGIMFPDFD ELGVQKIIPD  60
TTFIRKWKHK IEAIVITHGH EDHIGALPWV IPALDPSTPI FASSFTMELI RKRLKENGIF  120
VPSRLKMFRT KRKFMAGPFE IEPIRVTHSI PDCCGLVLRC ADGTILHTGD WKIDESPLDG  180
QGFDREGLEE LSKEGVTLMM SDSTNVLSPG RTTSESSVAD ALMRHISAAQ GRVITTQFAS  240
NIHRLGSVKA AADATGRKLV FVGMSLRTYL DAAWRDGKAP IDPSTLVKVE DIDSYAPKDL  300
LIVTTGSQAE PRAALNLASF GSSHSVKLTK EDIILYSAKV IPGNESRVMK MLNRISDMGS  360
TIVMGKNEGL HTSGHGYRGE LEEVLRIVKP QHFLPIHGEL LFLKEHELLG RSTGIHHTTV  420
IKNGEMLGVS HLRNRRVLSN GFTLLGKENL QLKYSDGDKA FGTSSDLCVD ERLKIALDGI  480
IVISMEILRP QNVNGLAESS IKGKIRITTR CLWLDKGKLY DALYKAAHAA LSSCPINCPL  540
PHMERTVSEV LRKLVRKYSG KRPEVIAIAM ENPTAVLADE VSTRLSGKPH VDDGGEVKAP  600
LPVEVSTVNP EKLSSDTKEP DDFWNAMVKL SAGDKLAEDK DGLVLQEEHV KKDDSESTET  660
PNPSKPVKRN KWKPEEVKKF IEMRGKQHSR FQVVKGRMAL WEEISRNLLA EGINRSPGQC  720
KSLWSSLVQK YEESKSGKRS RKSWPYYEEM DGALSDSEAM ATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein