PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000024.1_g000021.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 861aa MW: 98602.8 Da PI: 6.2794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000024.1_g000021.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.4	1.8e-26	104	207	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkk 70 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +r+ ++t+Cka+++vk+ Rmu_ssc0000024.1_g000021.1 104 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKTynnkprarqnkqdPENATGRRSCSKTDCKASMHVKR 186 5****************************************999999999988766554555559999********* PP FAR1 71 ekdgkwevtkleleHnHelap 91 ++dgkw+++++++eHnHel p Rmu_ssc0000024.1_g000021.1 187 RSDGKWVIHNFVKEHNHELLP 207 ****************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MIFSDDHQLK LNSLTMDIDL RLPSGDHDKE DDEPNAIDNM LEHEEKLHNG DIESAHIVDV 60 RDEVHTEDGG DLNSPTADMV IFKEDTNLEP LFGMEFESHG EAYSFYQEYA RSMGFNTAIQ 120 NSRRSKTSRE FIDAKFACSR YGTKREYDKT YNNKPRARQN KQDPENATGR RSCSKTDCKA 180 SMHVKRRSDG KWVIHNFVKE HNHELLPAQA VSEQTRKMYA AMARQFAEYK NVVGLKSDPK 240 NPFDKGRNLS LEAGDLKMLL DFFTQMQNMN SNFFYAIDLG EDQRLKTLFW VDGKGRNDYV 300 NFNDVVSFDT TYIRSKYKMP LVLFVGVNQH YQFVLLGCAL VSDESATTYY WLMQTWLKAM 360 GGQTPKVIIS DHDKSIKSVV SEVFPNAHHC FCLWNILGKV SENLGHVIKR HENFLANFEE 420 CIHRPSTTEE FEKTWCEIVD ECELKDNDWI QSLYEDRKQW VPTYMTDVCL AGMSMVQRSD 480 SVNSFFDKYV HKKTTVQEFL KQYEAILQDR YEEEAKADSD MWNKQPTAKS PSPLEKSVSL 540 IYTPSVLKKF QVEVLGAIGC NPKRDRQDEM TTTYRVHDCE KNQDFTVAWN EMKLEVSCSC 600 CLFEYKGYLC RHALIVLQMC QIGTIPDQYI LKRWTKESKS RHLVVQEPGH VASRVQKFDD 660 LSQRAMKLIG EGSMSQESYS IACHALEEAF GSCLAVNNSS KSLVEAGTSG TQGLPCIEED 720 SQNRSIGKGN KKKNPTKKRK VNSEPEVMTV GAQDSLQQMD KLNSRAITID GYYGGQQTVQ 780 GMVQLNLMGP TRDNYYGNQQ TIQGLGQLNS IAPSHESYYN AQQSMHGLGQ MDFFRTGFTY 840 NIRDDPNVRT APLHDDASRH A

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MIFSDDHQLK LNSLTMDIDL RLPSGDHDKE DDEPNAIDNM LEHEEKLHNG DIESAHIVDV  60
RDEVHTEDGG DLNSPTADMV IFKEDTNLEP LFGMEFESHG EAYSFYQEYA RSMGFNTAIQ  120
NSRRSKTSRE FIDAKFACSR YGTKREYDKT YNNKPRARQN KQDPENATGR RSCSKTDCKA  180
SMHVKRRSDG KWVIHNFVKE HNHELLPAQA VSEQTRKMYA AMARQFAEYK NVVGLKSDPK  240
NPFDKGRNLS LEAGDLKMLL DFFTQMQNMN SNFFYAIDLG EDQRLKTLFW VDGKGRNDYV  300
NFNDVVSFDT TYIRSKYKMP LVLFVGVNQH YQFVLLGCAL VSDESATTYY WLMQTWLKAM  360
GGQTPKVIIS DHDKSIKSVV SEVFPNAHHC FCLWNILGKV SENLGHVIKR HENFLANFEE  420
CIHRPSTTEE FEKTWCEIVD ECELKDNDWI QSLYEDRKQW VPTYMTDVCL AGMSMVQRSD  480
SVNSFFDKYV HKKTTVQEFL KQYEAILQDR YEEEAKADSD MWNKQPTAKS PSPLEKSVSL  540
IYTPSVLKKF QVEVLGAIGC NPKRDRQDEM TTTYRVHDCE KNQDFTVAWN EMKLEVSCSC  600
CLFEYKGYLC RHALIVLQMC QIGTIPDQYI LKRWTKESKS RHLVVQEPGH VASRVQKFDD  660
LSQRAMKLIG EGSMSQESYS IACHALEEAF GSCLAVNNSS KSLVEAGTSG TQGLPCIEED  720
SQNRSIGKGN KKKNPTKKRK VNSEPEVMTV GAQDSLQQMD KLNSRAITID GYYGGQQTVQ  780
GMVQLNLMGP TRDNYYGNQQ TIQGLGQLNS IAPSHESYYN AQQSMHGLGQ MDFFRTGFTY  840
NIRDDPNVRT APLHDDASRH A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein