PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000022.1_g000039.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 485aa MW: 53786.1 Da PI: 5.3628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000022.1_g000039.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	303	348	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI +L Rmu_ssc0000022.1_g000039.1 303 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYITDL 348 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MDDLIISPSS SSSLVSLPQE PTLQQRLQFI LQSQPELWSY AIFWQASNDV ENGRLLLGWG 60 DGYFQCPKNP SPNHNNNNSL SSSGGAPHSD RRKILKGIQS ILNDNNPELD MDNFMALNGD 120 VSDAEWFYVL SLTRSFAVGD GSVPGKAFGS GTSIWLSGAH ELQFNNNCER AKEAQIHGIE 180 TLICIPTSDG VLEMGSSGLI RENWGLIQQA KSMFGSDQPD PETRPLEFIN RNFSFADIGI 240 IAGVQEEDHS SYNDDKKHVF GSSKKKNGAP NPNPDFADSD CQMKRAPKKR GRKPGLGRDT 300 PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVSYITDLKA KVDELESKLQ 360 RESKKVKVEM ADNQDNQSTT TTASVEQTQT VRPDINNTNN GSALEIEVKI VGTDAMIRVQ 420 SENVNYPSAR LMTAMRDLEF RIHHASLSSI NDLMLQDIVV KVPDNMRSEE GLKAALLGIL 480 DQNQA

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MDDLIISPSS SSSLVSLPQE PTLQQRLQFI LQSQPELWSY AIFWQASNDV ENGRLLLGWG  60
DGYFQCPKNP SPNHNNNNSL SSSGGAPHSD RRKILKGIQS ILNDNNPELD MDNFMALNGD  120
VSDAEWFYVL SLTRSFAVGD GSVPGKAFGS GTSIWLSGAH ELQFNNNCER AKEAQIHGIE  180
TLICIPTSDG VLEMGSSGLI RENWGLIQQA KSMFGSDQPD PETRPLEFIN RNFSFADIGI  240
IAGVQEEDHS SYNDDKKHVF GSSKKKNGAP NPNPDFADSD CQMKRAPKKR GRKPGLGRDT  300
PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVSYITDLKA KVDELESKLQ  360
RESKKVKVEM ADNQDNQSTT TTASVEQTQT VRPDINNTNN GSALEIEVKI VGTDAMIRVQ  420
SENVNYPSAR LMTAMRDLEF RIHHASLSSI NDLMLQDIVV KVPDNMRSEE GLKAALLGIL  480
DQNQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	8e-79	bHLH family protein