PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000018.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 714aa MW: 79996.6 Da PI: 6.2703

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000018.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57.8	2.2e-18	493	552	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W KY q ++ g++ pr YY C+ + gC++ k+v+rs+ d+++++itY+g+H+++ Rmu_ssc0000018.1_g000006.1 493 SDGFRWVKYAQTDIPGAKSPRVYYVCAPQnvgGCMAIKEVQRSN-DKEILKITYRGRHTCT 552 7************************988999*******.************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MFPEISEDMG ALSELMLDGS AIKEIPSSIE RLRGLKSLSM KNCTSLVCLP DSICNLADLI 60 YLYLEGCSKL CNLPENLGNL KYLCELKVDD TGIKRLPACI LHLKLGRLKF HYCKQMEAPL 120 SSWPSSIEDR CTVVVHLDFS YCNLKVLSDA IAYFRSLKVL NLSRNNNLKS LPATMNQLGY 180 LERLQLEDCK RLRSIPELSS RISYINAHNC TALEAVSTPQ SPYDIGRCFI FSNCSQLIQR 240 DFFRDIVETH FPPQGNCSRP FYFSIPRTEI PEQFIHQGRG SSVTAQLPQN WFHSNKFLGF 300 AICGVTNQPQ GVDYWKLSAR CFFTFKGDHC EYRFSFSLFN IYFDGFYRDW LVSNHMLVGY 360 VPWSEFGING EEVNERHYTE AKFEIELLHC ETLEEDGVLF HPSIERCDPC IERCGVRFVF 420 ANNEDEEVAH QDFGEPMVQG DNSEIRSLEG CSAERSGSDI TSDTSDEEEQ YLKLSEVFEG 480 ANREPSMETE VPSDGFRWVK YAQTDIPGAK SPRVYYVCAP QNVGGCMAIK EVQRSNDKEI 540 LKITYRGRHT CTLASTSNGG RVDSSTSVAN GASSVHDQVV QSPSSPVANG HGGNVTRVAD 600 NPVNDNNMIM LRDASSQDME PTPSNVASVS SQPVISSPSL TQVNLQPQSC SQPIVIRSSP 660 NSRTIVCPNT GMLMKTKSVA HKAKPMPKPV TKTSTRARAQ QGPKQDSDKK MWKP

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MFPEISEDMG ALSELMLDGS AIKEIPSSIE RLRGLKSLSM KNCTSLVCLP DSICNLADLI  60
YLYLEGCSKL CNLPENLGNL KYLCELKVDD TGIKRLPACI LHLKLGRLKF HYCKQMEAPL  120
SSWPSSIEDR CTVVVHLDFS YCNLKVLSDA IAYFRSLKVL NLSRNNNLKS LPATMNQLGY  180
LERLQLEDCK RLRSIPELSS RISYINAHNC TALEAVSTPQ SPYDIGRCFI FSNCSQLIQR  240
DFFRDIVETH FPPQGNCSRP FYFSIPRTEI PEQFIHQGRG SSVTAQLPQN WFHSNKFLGF  300
AICGVTNQPQ GVDYWKLSAR CFFTFKGDHC EYRFSFSLFN IYFDGFYRDW LVSNHMLVGY  360
VPWSEFGING EEVNERHYTE AKFEIELLHC ETLEEDGVLF HPSIERCDPC IERCGVRFVF  420
ANNEDEEVAH QDFGEPMVQG DNSEIRSLEG CSAERSGSDI TSDTSDEEEQ YLKLSEVFEG  480
ANREPSMETE VPSDGFRWVK YAQTDIPGAK SPRVYYVCAP QNVGGCMAIK EVQRSNDKEI  540
LKITYRGRHT CTLASTSNGG RVDSSTSVAN GASSVHDQVV QSPSSPVANG HGGNVTRVAD  600
NPVNDNNMIM LRDASSQDME PTPSNVASVS SQPVISSPSL TQVNLQPQSC SQPIVIRSSP  660
NSRTIVCPNT GMLMKTKSVA HKAKPMPKPV TKTSTRARAQ QGPKQDSDKK MWKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	5e-15	WRKY family protein