PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000009.1_g000034.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 456aa MW: 51198 Da PI: 5.1471

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000009.1_g000034.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.7	2.1e-34	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+ye+++d ++++++sws++++sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ Rmu_ssc0000009.1_g000034.1 14 FLSKTYEMVDDCSTDSIVSWSASNRSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFAND 87 9******************999************************************9998.........** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 F +g+ +l+++i+r+k Rmu_ssc0000009.1_g000034.1 88 DFVRGEPQLMKNIHRRKP 105 *************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MDEVQGVSGS LPPFLSKTYE MVDDCSTDSI VSWSASNRSF IVWNPPEFAR DLLPKYFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGEPQLMKNI HRRKPVHSHS VPNLQVQGQG 120 QGQGQGSSSL SEAERKSMKD EIERLNHEKE RLAVELQRHE QERQGMELQM QVLKDRLQHM 180 QRQQQTMASV VARVLQRPDI ALNPLPQFEL CGRKRRFSSV DLAYDQVSIG SGQMGSWENV 240 TGGNMEMGKV LQLESFLTFW EDTIHDVAET QLQANTNMEL TESTSCAESP AVSCMQRIVD 300 HQSKSTAIDM NTEPAAAVSP VPARSVSPAP AGSVSLERAR SVSPEPTRSV SLECARSVSP 360 EPARSVSLEP DASKQQPSKE QTAKITGAGV NDLFWEQFLT ENPGSTDSQE VQLERNDSDG 420 RGNEINPSDH GKLWWNMRNV NNLTEQMGHL SPVEKT

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MDEVQGVSGS LPPFLSKTYE MVDDCSTDSI VSWSASNRSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGEPQLMKNI HRRKPVHSHS VPNLQVQGQG  120
QGQGQGSSSL SEAERKSMKD EIERLNHEKE RLAVELQRHE QERQGMELQM QVLKDRLQHM  180
QRQQQTMASV VARVLQRPDI ALNPLPQFEL CGRKRRFSSV DLAYDQVSIG SGQMGSWENV  240
TGGNMEMGKV LQLESFLTFW EDTIHDVAET QLQANTNMEL TESTSCAESP AVSCMQRIVD  300
HQSKSTAIDM NTEPAAAVSP VPARSVSPAP AGSVSLERAR SVSPEPTRSV SLECARSVSP  360
EPARSVSLEP DASKQQPSKE QTAKITGAGV NDLFWEQFLT ENPGSTDSQE VQLERNDSDG  420
RGNEINPSDH GKLWWNMRNV NNLTEQMGHL SPVEKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-118	HSF family protein