PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0042823.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 432aa MW: 49284.9 Da PI: 4.3358

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0042823.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.2	3.2e-23	15	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr 76 pG rF P ++elv +yLk+ ++g+k++ + + ++d+y + ePw++ +++k+ +k++yfF++++k ++t++r +r Rmu_sc0042823.1_g000001.1 15 LPGERFCPMEDELVLFYLKPMLSGEKVPGRNSvVFDCDLYGHqEPWEIWEAYKTrrkndlrLNKDIYFFTQHKKMSSTDTRIRR 98 589*********************88766549998879743333222223223477************** PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+Wk + k+v+s +g++vglkk L++ ++ + ++ W++he+ l Rmu_sc0042823.1_g000001.1 99 TVGNGTWKGDDSGKPVKSLeTGRVVGLKKRLTYK--NEASVHNGCWILHEFYL 149 ****9999999988668999*****8..44555699*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MQQEFAMEET RGNQLPGERF CPMEDELVLF YLKPMLSGEK VPGRNSVVFD CDLYGHQEPW 60 EIWEAYKTRR KNDLRLNKDI YFFTQHKKMS STDTRIRRTV GNGTWKGDDS GKPVKSLETG 120 RVVGLKKRLT YKNEASVHNG CWILHEFYLD PSLRNKKQKV KDYVLCLLRK NGEPKTKIEK 180 KRKQREEEEV LENNYACDDG ENTNKEQEEL LQPQAKRQRN VPSIDNALVP MPSEEDAFAA 240 ELEETLPCFE DDNAPSEAKA IGFQGEQNGG LQQYFASEVQ SGPSFGDDHG ILNPLPEEDF 300 LWEEMLEQMG MIEMEDLLVV NGATSNMDVA KENVLNNTLL HTPTPSMSPA YDSTDMPYLS 360 LENCCTDLAG SNNVCGGSIS FQDGAYWPES IVKAPTEEQQ KTADEDCSEW LESISFSPDE 420 NNFLWSEVQW CS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MQQEFAMEET RGNQLPGERF CPMEDELVLF YLKPMLSGEK VPGRNSVVFD CDLYGHQEPW  60
EIWEAYKTRR KNDLRLNKDI YFFTQHKKMS STDTRIRRTV GNGTWKGDDS GKPVKSLETG  120
RVVGLKKRLT YKNEASVHNG CWILHEFYLD PSLRNKKQKV KDYVLCLLRK NGEPKTKIEK  180
KRKQREEEEV LENNYACDDG ENTNKEQEEL LQPQAKRQRN VPSIDNALVP MPSEEDAFAA  240
ELEETLPCFE DDNAPSEAKA IGFQGEQNGG LQQYFASEVQ SGPSFGDDHG ILNPLPEEDF  300
LWEEMLEQMG MIEMEDLLVV NGATSNMDVA KENVLNNTLL HTPTPSMSPA YDSTDMPYLS  360
LENCCTDLAG SNNVCGGSIS FQDGAYWPES IVKAPTEEQQ KTADEDCSEW LESISFSPDE  420
NNFLWSEVQW CS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	183	PKTKIEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-15	NAC family protein