PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0040267.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 366aa MW: 40794.2 Da PI: 9.359

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0040267.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.4	1.2e-31	46	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.........vikev.diykvePwdLpkkvkaeekewyfFskrdk 66 lp+G++F+Ptd+e++ ++L+ kv +++ + + +i+ +i++++P++Lp v+++ +fF++ +k Rmu_sc0040267.1_g000002.1 46 LPAGVKFDPTDQEVL-QHLEGKVWSSTdiaagnklH---HhplidqfipTIEGEnGICYTHPHKLP-GVSKDGLVRHFFHRPSK 124 799********99.9999988766665540...15556665544666657******.555666688**** PP NAM 67 kyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +y+tg+rk+r+ + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Rmu_sc0040267.1_g000002.1 125 AYTTGSRKRRKvhtdrdssgeGGETRWHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 197 ******7566666655433778********.9*********6657999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MTHCNDLGQE DQTIIAKDGL TTRTCPSCGY QIKYQQQAGI QNLPGLPAGV KFDPTDQEVL 60 QHLEGKVWSS TDIAAGNKLH HHPLIDQFIP TIEGENGICY THPHKLPGVS KDGLVRHFFH 120 RPSKAYTTGS RKRRKVHTDR DSSGEGGETR WHKTGKTRPV FVGGKVKGYK KILVLYTNYG 180 KQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGNSGMKDL INNNSAKLMK 240 GQSGHNEALV QYCNNANSFI SFDQNGQDRS STVGGGLVGV ELSAELRDFV IIHYCNGSKP 300 SYLTHTFLHV IDGIPIGVLI KLTIMDLVWS YRFETRSITT FAGEKFSRDG VQVKTGPQVV 360 KVAVAV

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MTHCNDLGQE DQTIIAKDGL TTRTCPSCGY QIKYQQQAGI QNLPGLPAGV KFDPTDQEVL  60
QHLEGKVWSS TDIAAGNKLH HHPLIDQFIP TIEGENGICY THPHKLPGVS KDGLVRHFFH  120
RPSKAYTTGS RKRRKVHTDR DSSGEGGETR WHKTGKTRPV FVGGKVKGYK KILVLYTNYG  180
KQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGNSGMKDL INNNSAKLMK  240
GQSGHNEALV QYCNNANSFI SFDQNGQDRS STVGGGLVGV ELSAELRDFV IIHYCNGSKP  300
SYLTHTFLHV IDGIPIGVLI KLTIMDLVWS YRFETRSITT FAGEKFSRDG VQVKTGPQVV  360
KVAVAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC family protein