PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0038699.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 1157aa    MW: 129363 Da    PI: 6.6428
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0038699.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.97e-22126227199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +g
  Rmu_sc0038699.1_g000002.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDSAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAG 207
                                99*****************************96555444..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D v+F   ++++ +l+++++r+
  Rmu_sc0038699.1_g000002.1 208 DAVLFI--RDEKSQLLLGIRRA 227
                                ******..45677789999997 PP
2Auxin_resp121.66.1e-40252334183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aaha++++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+s+ldpvrW+ S+Wr+L+
  Rmu_sc0038699.1_g000002.1 252 AAHATASNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISELDPVRWKSSQWRNLQ 334
                                79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1157 aa     Download sequence    
MKAPTNGFLA TSVEGEQKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICLLHN VTLHADTETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQSR  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ PPAQELVARD LHDSAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDAV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHATASNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISEL DPVRWKSSQW RNLQVGWDES TAGDRPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDMENAF KRAMPWLGDE FGMKNSPSSI FPGLSLVQWM  420
NMQQNNQFSA PQSGFFPSMV PPTTLHNGTD DPSKLLNFQA PGLTAPGQLN KAAPPNQVSQ  480
VQQPTVTWPQ QQQLQQLMQN PMNQQQQNHS QQQQLQQLLH TPLNQQQQNH PQQQQLQQLM  540
QTPANQQLQN YSQQQQQQRE QQNHQEPQGL QQLQQLHQLH QQQPQRQQSQ QQQQLGQPTL  600
VSNGPVTPNQ IPSQNSQQPM MFTQLQQQHS LTSSTQSQQA VHTPNKNSFQ SAAGTQDSQI  660
QQQLELQPSL LQRQQQAQLQ QSPLQLLQQP QKAQQQPQVQ SSSQQALSEQ QLHLQLLQKL  720
QQQQQQQQQP QLFSPSSPLL QPQMLQQQLA HQQNQQLQQL QLPLSQHHQQ QLSGNSFSAD  780
KLLSSNNFSA SPMMQAQHVS SIQQQNQHKP VTAIRSHSNL TEGDGPSCST SPSTNNCQVS  840
SSNLLNRNQQ GTAMLIGDPV AEPSSNLVHD FQSKSDIRIK HELPISKGLD QIKYKGTITD  900
QLEASSSGTS YCLDASTIQQ NYALPSFCLD GDVQSHPRNN LPFSANVDGL APDTLMSRGY  960
DSQKDLQNLL SNYGGTPRDI ETELSTAAIS SQSFGAPNMP FKPGCSSDVA LNDAGVLNNG  1020
LWGSQAQRLR TYTKVQKRGS VGRCIDVTRY KGYDELRHDL ARMFGIEGQL EDPQRTDWKL  1080
VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSVEVQQMSL DGDLGNVPVP NQACSGTDSG  1140
NAWRAPYEDN SAASFNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein