PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0038578.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 250aa    MW: 27868.3 Da    PI: 9.8911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0038578.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001980102123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C + F ++  L  H++ H
  Rmu_sc0038578.1_g000001.1  80 FSCNYCQRKFYSSQALGGHQNAH 102
                                89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
METQSQKPQK QPVPEDTNQQ LPQQAPKPAD IVLDLSLISN KISDQRLNTE LNLIDCVDLN  60
MCSETSTDDP KGTSHEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTLAK KAVAHKIGAV  120
SDNFRLLSHR FSSMASLPLH GSFNNRSLGI QVHSTIHKPS WYQSSLYGHN GNFLRHPIDQ  180
QPAIGRLAAA GSMSSSSSSG GGMGRFETST ARKFFPVAER IGRFWWNSSV SHLKTTQDHE  240
LQKLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-43C2H2 family protein