PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0033519.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 431aa MW: 48977.7 Da PI: 4.2118

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0033519.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69.9	6.8e-22	15	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr 76 pG rF P ++elv +yLk+ ++g+k++ + + ++d+y + eP ++ +++k+ +k++yfF++++k ++t++r +r Rmu_sc0033519.1_g000005.1 15 LPGERFCPMEDELVLFYLKPMLSGQKVPGRNLvVFDCDLYGHqEPCEIWEAYKTrrpndlrLNKDIYFFTQHKKMSSTDSRIRR 98 589*********************998776699998879*743333234333334588************** PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+Wk + k+v+s +g++vglkk L++ ++ + ++ W++he+ l Rmu_sc0033519.1_g000005.1 99 TVGNGTWKGDDSGKPVKSLeTGRVVGLKKRLTYK--NEASVHNGCWILHEFYL 149 ****9999999988668999*****8..44555699*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MQQEFAMEES RGNQLPGERF CPMEDELVLF YLKPMLSGQK VPGRNLVVFD CDLYGHQEPC 60 EIWEAYKTRR PNDLRLNKDI YFFTQHKKMS STDSRIRRTV GNGTWKGDDS GKPVKSLETG 120 RVVGLKKRLT YKNEASVHNG CWILHEFYLD RSLRDKKQKV KDYVLCLLRK NGEPKTKIEK 180 KRKQREEEEV LENNYACDDG ENTNKEQEEL LEPQVKRQRN VPSIDNALVP MPSEVDAFAA 240 ELEETLPCFE DDNAPSEAEE IGFQGEENWG LQQLASEVQS GPSFGEDRGI LIPLPEEDFL 300 LEEMVEQMGM VEMEDLLVVN GATSNMEVAE ENVLNNTLLH TPASSLSAAY DGIDMPYLSM 360 ENGCTDSAGS NNVCGGSIGF QDGAYWPESL VEVLTEEQQK TADGDCSDWL ESISFSPEEN 420 NFLWSEVQWC L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MQQEFAMEES RGNQLPGERF CPMEDELVLF YLKPMLSGQK VPGRNLVVFD CDLYGHQEPC  60
EIWEAYKTRR PNDLRLNKDI YFFTQHKKMS STDSRIRRTV GNGTWKGDDS GKPVKSLETG  120
RVVGLKKRLT YKNEASVHNG CWILHEFYLD RSLRDKKQKV KDYVLCLLRK NGEPKTKIEK  180
KRKQREEEEV LENNYACDDG ENTNKEQEEL LEPQVKRQRN VPSIDNALVP MPSEVDAFAA  240
ELEETLPCFE DDNAPSEAEE IGFQGEENWG LQQLASEVQS GPSFGEDRGI LIPLPEEDFL  300
LEEMVEQMGM VEMEDLLVVN GATSNMEVAE ENVLNNTLLH TPASSLSAAY DGIDMPYLSM  360
ENGCTDSAGS NNVCGGSIGF QDGAYWPESL VEVLTEEQQK TADGDCSDWL ESISFSPEEN  420
NFLWSEVQWC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	183	PKTKIEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-14	NAC family protein