PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0033082.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 583aa    MW: 66345.8 Da    PI: 7.4379
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0033082.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.41.9e-2871155187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+ ++r+++lk+plWe++s+k+ e g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+
  Rmu_sc0033082.1_g000001.1  71 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDISRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--PEGKTYRFFDE 152
                                8********************************************************************95..55568****** PP

                   trihelix  85 lea 87 
                                lea
  Rmu_sc0033082.1_g000001.1 153 LEA 155
                                985 PP
2trihelix101.95.1e-32418503187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r++++ ++ ++  k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+q
  Rmu_sc0033082.1_g000001.1 418 RWPKTEVQALINLRTSLDVKYHEAGPKGSLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFHQ 500
                                8********************************************************************97.99********** PP

                   trihelix  85 lea 87 
                                lea
  Rmu_sc0033082.1_g000001.1 501 LEA 503
                                *85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MLGSSGEAMM VTEPAVLLHE GSSTTTETAA ALLSNSGEED HHKHTSGDVD HEGGHDDDHR  60
SYGGGGGGGN RWPRQETLAL LKIRSQMDAA FRDSSLKAPL WEDISRKLGE LGYYRSAKKC  120
KEKFENVYKY HRRTKEGRSG KPEGKTYRFF DELEAFDRHQ NSHHPSIIPP KPPVVPWTNN  180
NHHHPNQIVP PVVTVPQNGV TPATDPIIHS STNNFSRPQQ IQASQDNTNG FRLLNPTNLF  240
SSSTSSTTAS DEEFQQRNKR KRKWKYFFRR LTKQVLEKQE KLQETFLEAI TKCDQERMVK  300
EEALRMQEMA RIDREHEILV QERSTAAAKD TALIQFLQKV SLQHNSNDNR SLEITDAAIL  360
VIPPTNVPRP LPALPVSWAT DQRGLTTSSD LAPRTLEAKK VYSNGENNSV LAAVGSSRWP  420
KTEVQALINL RTSLDVKYHE AGPKGSLWEE ISAGMRRLGY NRSSKRCKEK WENINKYFKK  480
VKESSKTRPE DSKTCPYFHQ LEALYKKKNK KIEYHKSCID DRSAEKLQIM QPLRENVDPN  540
QEEDEHDHGE DGESTEEDQE HDNDHGQVYR DSSKLQTVFN GDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-120Trihelix family protein